FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0945, 350 aa
  1>>>pF1KE0945 350 - 350 aa - 350 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8139+/-0.000864; mu= 13.7070+/- 0.052
 mean_var=77.7386+/-16.076, 0's: 0 Z-trim(107.4): 63  B-trim: 106 in 1/48
 Lambda= 0.145464
 statistics sampled from 9469 (9532) to 9469 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.293), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS6141.1 POMK gene_id:84197|Hs108|chr8           ( 350) 2388 510.6 7.7e-145


>>CCDS6141.1 POMK gene_id:84197|Hs108|chr8                (350 aa)
 initn: 2388 init1: 2388 opt: 2388  Z-score: 2713.8  bits: 510.6 E(32554): 7.7e-145
Smith-Waterman score: 2388; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350)

               10        20        30        40        50        60
pF1KE0 MEKQPQNSRRGLAPREVPPAVGLLLIMALMNTLLYLCLDHFFIAPRQSTVDPTHCPYGHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MEKQPQNSRRGLAPREVPPAVGLLLIMALMNTLLYLCLDHFFIAPRQSTVDPTHCPYGHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RIGQMKNCSPWLSCEELRTEVRQLKRVGEGAVKRVFLSEWKEHKVALSQLTSLEMKDDFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RIGQMKNCSPWLSCEELRTEVRQLKRVGEGAVKRVFLSEWKEHKVALSQLTSLEMKDDFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 HGLQMLKSLQGTHVVTLLGYCEDDNTMLTEYHPLGSLSNLEETLNLSKYQNVNTWQHRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 HGLQMLKSLQGTHVVTLLGYCEDDNTMLTEYHPLGSLSNLEETLNLSKYQNVNTWQHRLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LAMDYVSIINYLHHSPVGTRVMCDSNDLPKTLSQYLLTSNFSILANDLDALPLVNHSSGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LAMDYVSIINYLHHSPVGTRVMCDSNDLPKTLSQYLLTSNFSILANDLDALPLVNHSSGM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LVKCGHRELHGDFVAPEQLWPYGEDVPFHDDLMPSYDEKIDIWKIPDISSFLLGHIEGSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LVKCGHRELHGDFVAPEQLWPYGEDVPFHDDLMPSYDEKIDIWKIPDISSFLLGHIEGSD
              250       260       270       280       290       300

              310       320       330       340       350
pF1KE0 MVRFHLFDIHKACKSQTPSERPTAQDVLETYQKVLDTLRDAMMSQAREML
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MVRFHLFDIHKACKSQTPSERPTAQDVLETYQKVLDTLRDAMMSQAREML
              310       320       330       340       350




350 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:39:23 2016 done: Sat Nov  5 04:39:23 2016
 Total Scan time:  2.640 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]