FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0943, 336 aa
  1>>>pF1KE0943 336 - 336 aa - 336 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6457+/-0.000718; mu= 6.7999+/- 0.043
 mean_var=156.5073+/-32.678, 0's: 0 Z-trim(115.6): 26  B-trim: 981 in 1/50
 Lambda= 0.102520
 statistics sampled from 16170 (16196) to 16170 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.498), width:  16
 Scan time:  3.270

The best scores are:                                      opt bits E(32554)
CCDS59328.1 PLK5 gene_id:126520|Hs108|chr19        ( 336) 2373 362.0 3.9e-100


>>CCDS59328.1 PLK5 gene_id:126520|Hs108|chr19             (336 aa)
 initn: 2373 init1: 2373 opt: 2373  Z-score: 1911.3  bits: 362.0 E(32554): 3.9e-100
Smith-Waterman score: 2373; 99.7% identity (100.0% similar) in 336 aa overlap (1-336:1-336)

               10        20        30        40        50        60
pF1KE0 MYTVLTGTPPFMASPLSEMYQNIREGHYPEPAHLSANARRLIVHLLAPNPAERPSLDHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MYTVLTGTPPFMASPLSEMYQNIREGHYPEPAHLSANARRLIVHLLAPNPAERPSLDHLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QDDFFTQGFTPDRLPAHSCHSPPIFAIPPPLGRIFRKVGQRLLTQCRPPCPFTPKEASGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QDDFFTQGFTPDRLPAHSCHSPPIFAIPPPLGRIFRKVGQRLLTQCRPPCPFTPKEASGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GEGGPDPDSMEWDGESSLSAKEVPCLEGPIHLVAQGTLQSDLAGPEGSRRPEVEAALRHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GEGGPDPDSMEWDGESSLSAKEVPCLEGPIHLVAQGTLQSDLAGPEGSRRPEVEAALRHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QLCLDVGPPATQDPLGEQQPILWAPKWVDYSSKYGFGYQLLDGGRTGRHPHGPATPRREG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QLCLDVGPPATQDPLGEQQPILWAPKWVDYSSKYGFGYQLLDGGRTGRHPHGPATPRREG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 TLPTPVPPAGPGLCLLRFLASEHALLLLFSNGMVQVSFSGVPAQLVLSGEGEGLQLTLWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TLPTPVPPAGPGLCLLRFLASEHALLLLFSNGMVQVSFSGVPAQLVLSGEGEGLQLTLWE
              250       260       270       280       290       300

              310       320       330      
pF1KE0 QGSPGTSYSLDVPQSHGCAPTTGQHLHHALRMLQSI
       :::::::::::::.::::::::::::::::::::::
CCDS59 QGSPGTSYSLDVPRSHGCAPTTGQHLHHALRMLQSI
              310       320       330      




336 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:38:11 2016 done: Sat Nov  5 04:38:12 2016
 Total Scan time:  3.270 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]