FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0942, 294 aa
  1>>>pF1KE0942 294 - 294 aa - 294 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1159+/-0.000335; mu= 16.7230+/- 0.021
 mean_var=82.9567+/-17.430, 0's: 0 Z-trim(115.7): 35  B-trim: 1446 in 1/48
 Lambda= 0.140815
 statistics sampled from 26259 (26291) to 26259 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.308), width:  16
 Scan time:  7.680

The best scores are:                                      opt bits E(85289)
NP_612379 (OMIM: 614150) extracellular tyrosine-pr ( 493) 2025 421.2  2e-117


>>NP_612379 (OMIM: 614150) extracellular tyrosine-protei  (493 aa)
 initn: 2025 init1: 2025 opt: 2025  Z-score: 2229.3  bits: 421.2 E(85289): 2e-117
Smith-Waterman score: 2025; 100.0% identity (100.0% similar) in 294 aa overlap (1-294:200-493)

                                             10        20        30
pF1KE0                               MVLLERLRHPNVLQLYGYCYQDSEDIPDTL
                                     ::::::::::::::::::::::::::::::
NP_612 FSGHDLGSCVREFGVRRGCYRLAAHKLLKEMVLLERLRHPNVLQLYGYCYQDSEDIPDTL
     170       180       190       200       210       220         

               40        50        60        70        80        90
pF1KE0 TTITELGAPVEMIQLLQTSWEDRFRICLSLGRLLHHLAHSPLGSVTLLDFRPRQFVLVDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 TTITELGAPVEMIQLLQTSWEDRFRICLSLGRLLHHLAHSPLGSVTLLDFRPRQFVLVDG
     230       240       250       260       270       280         

              100       110       120       130       140       150
pF1KE0 ELKVTDLDDARVEETPCAGSTDCILEFPARNFTLPCSAQGWCEGMNEKRNLYNAYRFFFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 ELKVTDLDDARVEETPCAGSTDCILEFPARNFTLPCSAQGWCEGMNEKRNLYNAYRFFFT
     290       300       310       320       330       340         

              160       170       180       190       200       210
pF1KE0 YLLPHSAPPSLRPLLDSIVNATGELAWGVDETLAQLEKVLHLYRSGQYLQNSTASSSTEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 YLLPHSAPPSLRPLLDSIVNATGELAWGVDETLAQLEKVLHLYRSGQYLQNSTASSSTEY
     350       360       370       380       390       400         

              220       230       240       250       260       270
pF1KE0 QCIPDSTIPQEDYRCWPSYHHGSCLLSVFNLAEAVDVCESHAQCRAFVVTNQTTWTGRQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 QCIPDSTIPQEDYRCWPSYHHGSCLLSVFNLAEAVDVCESHAQCRAFVVTNQTTWTGRQL
     410       420       430       440       450       460         

              280       290    
pF1KE0 VFFKTGWSQVVPDPNKTTYVKASG
       ::::::::::::::::::::::::
NP_612 VFFKTGWSQVVPDPNKTTYVKASG
     470       480       490   




294 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:37:39 2016 done: Sat Nov  5 04:37:40 2016
 Total Scan time:  7.680 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]