FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0942, 294 aa
  1>>>pF1KE0942 294 - 294 aa - 294 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5689+/-0.00078; mu= 14.0051+/- 0.047
 mean_var=75.9003+/-15.621, 0's: 0 Z-trim(108.9): 36  B-trim: 128 in 1/49
 Lambda= 0.147215
 statistics sampled from 10490 (10505) to 10490 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.323), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS33186.2 PKDCC gene_id:91461|Hs108|chr2         ( 493) 2025 439.4 2.5e-123


>>CCDS33186.2 PKDCC gene_id:91461|Hs108|chr2              (493 aa)
 initn: 2025 init1: 2025 opt: 2025  Z-score: 2327.5  bits: 439.4 E(32554): 2.5e-123
Smith-Waterman score: 2025; 100.0% identity (100.0% similar) in 294 aa overlap (1-294:200-493)

                                             10        20        30
pF1KE0                               MVLLERLRHPNVLQLYGYCYQDSEDIPDTL
                                     ::::::::::::::::::::::::::::::
CCDS33 FSGHDLGSCVREFGVRRGCYRLAAHKLLKEMVLLERLRHPNVLQLYGYCYQDSEDIPDTL
     170       180       190       200       210       220         

               40        50        60        70        80        90
pF1KE0 TTITELGAPVEMIQLLQTSWEDRFRICLSLGRLLHHLAHSPLGSVTLLDFRPRQFVLVDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TTITELGAPVEMIQLLQTSWEDRFRICLSLGRLLHHLAHSPLGSVTLLDFRPRQFVLVDG
     230       240       250       260       270       280         

              100       110       120       130       140       150
pF1KE0 ELKVTDLDDARVEETPCAGSTDCILEFPARNFTLPCSAQGWCEGMNEKRNLYNAYRFFFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELKVTDLDDARVEETPCAGSTDCILEFPARNFTLPCSAQGWCEGMNEKRNLYNAYRFFFT
     290       300       310       320       330       340         

              160       170       180       190       200       210
pF1KE0 YLLPHSAPPSLRPLLDSIVNATGELAWGVDETLAQLEKVLHLYRSGQYLQNSTASSSTEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YLLPHSAPPSLRPLLDSIVNATGELAWGVDETLAQLEKVLHLYRSGQYLQNSTASSSTEY
     350       360       370       380       390       400         

              220       230       240       250       260       270
pF1KE0 QCIPDSTIPQEDYRCWPSYHHGSCLLSVFNLAEAVDVCESHAQCRAFVVTNQTTWTGRQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QCIPDSTIPQEDYRCWPSYHHGSCLLSVFNLAEAVDVCESHAQCRAFVVTNQTTWTGRQL
     410       420       430       440       450       460         

              280       290    
pF1KE0 VFFKTGWSQVVPDPNKTTYVKASG
       ::::::::::::::::::::::::
CCDS33 VFFKTGWSQVVPDPNKTTYVKASG
     470       480       490   




294 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:37:38 2016 done: Sat Nov  5 04:37:39 2016
 Total Scan time:  2.130 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]