FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0927, 363 aa
  1>>>pF1KE0927 363 - 363 aa - 363 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6358+/-0.000878; mu= 14.2617+/- 0.053
 mean_var=64.3873+/-13.011, 0's: 0 Z-trim(106.0): 20  B-trim: 149 in 1/46
 Lambda= 0.159836
 statistics sampled from 8707 (8716) to 8707 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.268), width:  16
 Scan time:  2.780

The best scores are:                                      opt bits E(32554)
CCDS13335.1 ADA gene_id:100|Hs108|chr20            ( 363) 2430 569.1  2e-162
CCDS82618.1 ADA gene_id:100|Hs108|chr20            ( 339) 1365 323.5 1.6e-88


>>CCDS13335.1 ADA gene_id:100|Hs108|chr20                 (363 aa)
 initn: 2430 init1: 2430 opt: 2430  Z-score: 3029.5  bits: 569.1 E(32554): 2e-162
Smith-Waterman score: 2430; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)

               10        20        30        40        50        60
pF1KE0 MAQTPAFDKPKVELHVHLDGSIKPETILYYGRRRGIALPANTAEGLLNVIGMDKPLTLPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAQTPAFDKPKVELHVHLDGSIKPETILYYGRRRGIALPANTAEGLLNVIGMDKPLTLPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FLAKFDYYMPAIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FLAKFDYYMPAIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 EGDLTPDEVVALVGQGLQEGERDFGVKARSILCCMRHQPNWSPKVVELCKKYQQQTVVAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EGDLTPDEVVALVGQGLQEGERDFGVKARSILCCMRHQPNWSPKVVELCKKYQQQTVVAI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DLAGDETIPGSSLLPGHVQAYQEAVKSGIHRTVHAGEVGSAEVVKEAVDILKTERLGHGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLAGDETIPGSSLLPGHVQAYQEAVKSGIHRTVHAGEVGSAEVVKEAVDILKTERLGHGY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 HTLEDQALYNRLRQENMHFEICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HTLEDQALYNRLRQENMHFEICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPLIF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 KSTLDTDYQMTKRDMGFTEEEFKRLNINAAKSSFLPEDEKRELLDLLYKAYGMPPSASAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KSTLDTDYQMTKRDMGFTEEEFKRLNINAAKSSFLPEDEKRELLDLLYKAYGMPPSASAG
              310       320       330       340       350       360

          
pF1KE0 QNL
       :::
CCDS13 QNL
          

>>CCDS82618.1 ADA gene_id:100|Hs108|chr20                 (339 aa)
 initn: 1365 init1: 1365 opt: 1365  Z-score: 1702.7  bits: 323.5 E(32554): 1.6e-88
Smith-Waterman score: 2225; 93.4% identity (93.4% similar) in 363 aa overlap (1-363:1-339)

               10        20        30        40        50        60
pF1KE0 MAQTPAFDKPKVELHVHLDGSIKPETILYYGRRRGIALPANTAEGLLNVIGMDKPLTLPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAQTPAFDKPKVELHVHLDGSIKPETILYYGRRRGIALPANTAEGLLNVIGMDKPLTLPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FLAKFDYYMPAIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FLAKFDYYMPAIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 EGDLTPDEVVALVGQGLQEGERDFGVKARSILCCMRHQPNWSPKVVELCKKYQQQTVVAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EGDLTPDEVVALVGQGLQEGERDFGVKARSILCCMRHQPNWSPKVVELCKKYQQQTVVAI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DLAGDETIPGSSLLPGHVQAYQEAVKSGIHRTVHAGEVGSAEVVKEAVDILKTERLGHGY
       ::::::::::::::::::::::                        ::::::::::::::
CCDS82 DLAGDETIPGSSLLPGHVQAYQ------------------------AVDILKTERLGHGY
              190       200                               210      

              250       260       270       280       290       300
pF1KE0 HTLEDQALYNRLRQENMHFEICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 HTLEDQALYNRLRQENMHFEICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPLIF
        220       230       240       250       260       270      

              310       320       330       340       350       360
pF1KE0 KSTLDTDYQMTKRDMGFTEEEFKRLNINAAKSSFLPEDEKRELLDLLYKAYGMPPSASAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KSTLDTDYQMTKRDMGFTEEEFKRLNINAAKSSFLPEDEKRELLDLLYKAYGMPPSASAG
        280       290       300       310       320       330      

          
pF1KE0 QNL
       :::
CCDS82 QNL
          




363 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:33:11 2016 done: Sat Nov  5 04:33:11 2016
 Total Scan time:  2.780 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]