Result of FASTA (ccds) for
pF1KE0924
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0924, 343 aa
1>>>pF1KE0924 343 - 343 aa - 343 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4162+/-0.000781; mu= 14.1448+/- 0.047
mean_var=174.1678+/-35.847, 0's: 0 Z-trim(114.4): 181 B-trim: 0 in 0/53
Lambda= 0.097183
statistics sampled from 14723 (14940) to 14723 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.459), width: 16
Scan time: 3.010
The best scores are: opt bits E(32554)
CCDS5797.1 PAX4 gene_id:5078|Hs108|chr7 ( 343) 2389 346.5 1.9e-95
CCDS31451.1 PAX6 gene_id:5080|Hs108|chr11 ( 422) 630 100.0 3.7e-21
CCDS65043.1 PAX5 gene_id:5079|Hs108|chr9 ( 348) 586 93.7 2.4e-19
CCDS46399.1 PAX8 gene_id:7849|Hs108|chr2 ( 398) 586 93.8 2.6e-19
CCDS65042.1 PAX5 gene_id:5079|Hs108|chr9 ( 319) 582 93.1 3.3e-19
CCDS42735.1 PAX8 gene_id:7849|Hs108|chr2 ( 287) 566 90.8 1.5e-18
CCDS41561.1 PAX2 gene_id:5076|Hs108|chr10 ( 394) 565 90.9 2e-18
CCDS7499.1 PAX2 gene_id:5076|Hs108|chr10 ( 396) 565 90.9 2e-18
CCDS42736.1 PAX8 gene_id:7849|Hs108|chr2 ( 321) 558 89.8 3.4e-18
CCDS46398.1 PAX8 gene_id:7849|Hs108|chr2 ( 450) 558 89.9 4.2e-18
CCDS65044.1 PAX5 gene_id:5079|Hs108|chr9 ( 295) 552 88.9 5.8e-18
CCDS65045.1 PAX5 gene_id:5079|Hs108|chr9 ( 324) 551 88.8 6.8e-18
CCDS65046.1 PAX5 gene_id:5079|Hs108|chr9 ( 328) 542 87.5 1.6e-17
CCDS65047.1 PAX5 gene_id:5079|Hs108|chr9 ( 357) 542 87.6 1.7e-17
CCDS65048.1 PAX5 gene_id:5079|Hs108|chr9 ( 362) 542 87.6 1.7e-17
CCDS6607.1 PAX5 gene_id:5079|Hs108|chr9 ( 391) 542 87.6 1.8e-17
CCDS9662.1 PAX9 gene_id:5083|Hs108|chr14 ( 341) 483 79.3 5.2e-15
CCDS74709.1 PAX1 gene_id:5075|Hs108|chr20 ( 457) 480 79.0 8.3e-15
CCDS13146.2 PAX1 gene_id:5075|Hs108|chr20 ( 534) 480 79.1 9.2e-15
CCDS44075.1 PAX7 gene_id:5081|Hs108|chr1 ( 518) 470 77.7 2.4e-14
CCDS46522.1 PAX3 gene_id:5077|Hs108|chr2 ( 483) 468 77.4 2.8e-14
CCDS2451.1 PAX3 gene_id:5077|Hs108|chr2 ( 206) 453 74.8 7e-14
CCDS46523.1 PAX3 gene_id:5077|Hs108|chr2 ( 215) 453 74.8 7.2e-14
CCDS2450.1 PAX3 gene_id:5077|Hs108|chr2 ( 403) 456 75.6 7.9e-14
CCDS2449.1 PAX3 gene_id:5077|Hs108|chr2 ( 407) 456 75.6 8e-14
CCDS42826.1 PAX3 gene_id:5077|Hs108|chr2 ( 479) 456 75.7 8.8e-14
CCDS42825.1 PAX3 gene_id:5077|Hs108|chr2 ( 484) 456 75.7 8.9e-14
CCDS2448.1 PAX3 gene_id:5077|Hs108|chr2 ( 505) 456 75.7 9.1e-14
CCDS44074.1 PAX7 gene_id:5081|Hs108|chr1 ( 505) 449 74.7 1.8e-13
CCDS186.1 PAX7 gene_id:5081|Hs108|chr1 ( 520) 449 74.7 1.8e-13
CCDS31452.1 PAX6 gene_id:5080|Hs108|chr11 ( 436) 421 70.7 2.5e-12
>>CCDS5797.1 PAX4 gene_id:5078|Hs108|chr7 (343 aa)
initn: 2389 init1: 2389 opt: 2389 Z-score: 1827.2 bits: 346.5 E(32554): 1.9e-95
Smith-Waterman score: 2389; 99.7% identity (99.7% similar) in 343 aa overlap (1-343:1-343)
10 20 30 40 50 60
pF1KE0 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RALQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPGTGHRNRTIFSPSQAEALEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 RALQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPGTGHRNRTIFSPSQAEALEKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 FQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKLKWEMQLPGASQGLTVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 FQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKLKWEMQLPGASQGLTVPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VAPGIISAQQSPGSVPTAALPALEPLGPSCYQLCWATAPERCLSDTPPKACLKPCWGHLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 VAPGIISAQQSPGSVPTAALPALEPLGPSCYQLCWATAPERCLSDTPPKACLKPCWGHLP
250 260 270 280 290 300
310 320 330 340
pF1KE0 PQPNSLDSGLLCLPCPSSHCPLASLSGSQALLWPGCPLLYGLE
:::::::::::::::::::: ::::::::::::::::::::::
CCDS57 PQPNSLDSGLLCLPCPSSHCHLASLSGSQALLWPGCPLLYGLE
310 320 330 340
>>CCDS31451.1 PAX6 gene_id:5080|Hs108|chr11 (422 aa)
initn: 935 init1: 618 opt: 630 Z-score: 493.3 bits: 100.0 E(32554): 3.7e-21
Smith-Waterman score: 821; 42.1% identity (60.7% similar) in 387 aa overlap (1-341:8-366)
10 20 30 40 50
pF1KE0 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRY
.:::::.:::::::: .:::.::.:: :: :::::::::.:::::::::::::
CCDS31 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 YRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSV
:.:: ..:..:::::::.::: ::..::: : :::..:::::. .: .::.::.:. :::
CCDS31 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV
70 80 90 100 110 120
120 130 140 150 160
pF1KE0 SSINRVLRAL-QEDQGLPCTRLRSPAVLAPAVLTPHSGSETPR-GTHPGTG---------
:::::::: : .: : . . . . :. ..:: : : .:::.
CCDS31 SSINRVLRNLASEKQQMGADGMYDKLRM----LNGQTGSWGTRPGWYPGTSVPGQPTQDG
130 140 150 160 170
170 180
pF1KE0 ----------------------------------HRNRTIFSPSQAEALEKEFQRGQYPD
.:::: :. : :::::::.: .:::
CCDS31 CQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPD
180 190 200 210 220 230
190 200 210 220 230 240
pF1KE0 SVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKLKWEMQLPGASQGLTVPRVAPGIISA
:: .::. .::: ..::::::::::::.:::. . . :. ..: : ::.
CCDS31 VFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRR-----QASNTPSHIP--ISS
240 250 260 270 280
250 260 270 280 290 300
pF1KE0 QQSPGSVPTAALPALEPLGPSCYQLCWATAPERCLSDTPPKACLKPCWGHLPPQPN-SLD
. : .. : .: : .... .:: : .. :::.:. ..
CCDS31 SFS----TSVYQPIPQPTTPVS---SFTSGSMLGRTDTA----LTNTYSALPPMPSFTMA
290 300 310 320 330
310 320 330 340
pF1KE0 SGLLCLPCPSSHCPLASLSGSQALLWPGCPLLYGLE
..: : :. : ..: . . : : . :
CCDS31 NNLPMQP------PVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTT
340 350 360 370 380 390
CCDS31 STGLISPGVSVPVQVPGSEPDMSQYWPRLQ
400 410 420
>>CCDS65043.1 PAX5 gene_id:5079|Hs108|chr9 (348 aa)
initn: 578 init1: 531 opt: 586 Z-score: 460.9 bits: 93.7 E(32554): 2.4e-19
Smith-Waterman score: 586; 38.2% identity (61.8% similar) in 322 aa overlap (1-308:20-325)
10 20 30 40
pF1KE0 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKV
.:::::.:::::::: .::.::.:: .:.::::::: :.:
CCDS65 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 SNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCA
:.:::::::::::.:: ..: ::::::..::: :: .::. : . :..:::::. .: :
CCDS65 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
110 120 130 140 150
pF1KE0 EGLCTQDKTPSVSSINRVLRA-LQE--DQGLPCTRLRSPAVLAPAVLTPHS--GSETPRG
: .: .: .::::::::..:. .:. .: .: . .: .. : . :: : . :
CCDS65 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASS-HSIGIQESPVPNGHSLPGRDFLRK
130 140 150 160 170
160 170 180 190 200 210
pF1KE0 THPGTGHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAK
: .:. .: :.:.. :.: .: : . .: ::.:.. .: .
CCDS65 QMRGD------LFTQQQLEVLDRVFERQHYSDIFT----TTEPIKPEQTTE--YSAMASL
180 190 200 210 220
220 230 240 250 260 270
pF1KE0 WRRQEKLKWEMQLPG-ASQGLTVP--RVAPGIISAQQSPGSVPTAALPALEPLGPSCYQL
. .: .. : :. : .:: . : . . . . ..: : . : : . :.
CCDS65 AGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGRDLASTTLPGYP-PHVPPAGQGSYSA
230 240 250 260 270 280
280 290 300 310 320
pF1KE0 CWATA--PERCLSDTP---PK-ACLKPCWGHLPPQPNSLDSGLLCLPCPSSHCPLASLSG
:. : .: .: :. . . : :.:. : :
CCDS65 PTLTGMVPGSEFSGSPYSHPQYSSYNDSWRF--PNPGLLGSPYYYSAAARGAAPPAAATA
290 300 310 320 330 340
330 340
pF1KE0 SQALLWPGCPLLYGLE
CCDS65 YDRH
>>CCDS46399.1 PAX8 gene_id:7849|Hs108|chr2 (398 aa)
initn: 619 init1: 533 opt: 586 Z-score: 460.3 bits: 93.8 E(32554): 2.6e-19
Smith-Waterman score: 587; 36.8% identity (55.6% similar) in 383 aa overlap (1-321:13-385)
10 20 30 40
pF1KE0 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSK
.::::: :::::::: .::.:: :: .:.::::::: :.::.:::::
CCDS46 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 ILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQD
::::::.:: ..: ::::::..::: :: .:.. : . :..:::::. .: :::.: .:
CCDS46 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
110 120 130 140 150
pF1KE0 KTPSVSSINRVLRA-LQEDQGLP---C--TRLRSPA-VLAP--AVLTPHSGSETPRGT--
.::::::::..:. .:. .:: : :. ::. .: : :: :.: . :.
CCDS46 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
160 170 180
pF1KE0 ---------HPGTGHRN--------------------------RT-IFSPSQAEALEKEF
.::. .:. :: :: . : :: :
CCDS46 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
190 200 210 220 230 240
190 200 210 220 230
pF1KE0 QRGQYPDSVARGKLATATS--LPEDTVRVWFSNRRAKWR-RQEKLKWEMQLPGASQGLTV
.: .::.. : . . . . : . ... .: . : .. : :
CCDS46 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNL-----STHQTY
250 260 270 280 290
240 250 260 270 280 290
pF1KE0 PRVA--PGIISAQQSPGSVPTAALPALEP-LG-----PSCYQLCWATAPERCLSDTPPKA
: :: : : ....::: :. .: : : : :: : .: :: :: : .
CCDS46 PVVAAPPFWICSKSAPGSRPSMPFPMLPPCTGSSRARPSSQGERWW-GP-RC-PDTHPTS
300 310 320 330 340 350
300 310 320 330 340
pF1KE0 CLKPC-WGHLPPQPNSL---DSGLLCLPCPSSHCPLASLSGSQALLWPGCPLLYGLE
: . .:: :.. . . : .: . :
CCDS46 --PPADRAAMPPLPSQAWWQEVNTLAMPMATPPTPPTARPGASPTPAC
360 370 380 390
>>CCDS65042.1 PAX5 gene_id:5079|Hs108|chr9 (319 aa)
initn: 557 init1: 531 opt: 582 Z-score: 458.3 bits: 93.1 E(32554): 3.3e-19
Smith-Waterman score: 582; 40.5% identity (64.5% similar) in 279 aa overlap (1-271:20-284)
10 20 30 40
pF1KE0 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKV
.:::::.:::::::: .::.::.:: .:.::::::: :.:
CCDS65 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 SNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCA
:.:::::::::::.:: ..: ::::::..::: :: .::. : . :..:::::. .: :
CCDS65 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
110 120 130 140 150
pF1KE0 EGLCTQDKTPSVSSINRVLRA-LQE--DQGLPCTRLRSPAVLAPAVLTPHS--GSETPRG
: .: .: .::::::::..:. .:. .: .: . .: .. : . :: : . :
CCDS65 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASS-HSIGIQESPVPNGHSLPGRDFLRK
130 140 150 160 170
160 170 180 190 200 210
pF1KE0 THPGTGHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAK
: .:. .: :.:.. :.: .: : . .: ::.:.. .: .
CCDS65 QMRGD------LFTQQQLEVLDRVFERQHYSDIFT----TTEPIKPEQTTE--YSAMASL
180 190 200 210 220
220 230 240 250 260 270
pF1KE0 WRRQEKLKWEMQLPG-ASQGLTVP--RVAPGIISAQQSPGSVPTAALPALEPLGPSCYQL
. .: .. : :. : .:: . : . . . . ..: : . : : . :
CCDS65 AGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGRDLASTTLPGYP-PHVPPAGQGSYSA
230 240 250 260 270 280
280 290 300 310 320 330
pF1KE0 CWATAPERCLSDTPPKACLKPCWGHLPPQPNSLDSGLLCLPCPSSHCPLASLSGSQALLW
CCDS65 PTLTGMVPGSPYYYSAAARGAAPPAAATAYDRH
290 300 310
>>CCDS42735.1 PAX8 gene_id:7849|Hs108|chr2 (287 aa)
initn: 604 init1: 533 opt: 566 Z-score: 446.7 bits: 90.8 E(32554): 1.5e-18
Smith-Waterman score: 566; 39.1% identity (64.6% similar) in 274 aa overlap (1-268:13-274)
10 20 30 40
pF1KE0 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSK
.::::: :::::::: .::.:: :: .:.::::::: :.::.:::::
CCDS42 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 ILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQD
::::::.:: ..: ::::::..::: :: .:.. : . :..:::::. .: :::.: .:
CCDS42 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 KTPSVSSINRVLRA-LQEDQGLPCTRLRSPAVLAPA-VLTPHSG---SETPRGTHPGTGH
.::::::::..:. .:. .:: . :.:. .: : :. :.:.. :. .
CCDS42 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 RNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRV-WFSNRRAKWRRQEK
... .: . ..... .. . ...: :. .:. :: :..
CCDS42 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFS--------QHH
190 200 210 220 230
230 240 250 260 270 280
pF1KE0 LKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALEPLGPSCYQLCWATAPERC
:. .. : : ..:. ...: : : :.: : :
CCDS42 LE-PLECPFERQHYPEAYASPSHTKGEQE---VNTLAMPMATPPTPPTARPGASPTPAC
240 250 260 270 280
290 300 310 320 330 340
pF1KE0 LSDTPPKACLKPCWGHLPPQPNSLDSGLLCLPCPSSHCPLASLSGSQALLWPGCPLLYGL
>>CCDS41561.1 PAX2 gene_id:5076|Hs108|chr10 (394 aa)
initn: 637 init1: 550 opt: 565 Z-score: 444.4 bits: 90.9 E(32554): 2e-18
Smith-Waterman score: 565; 39.6% identity (64.9% similar) in 285 aa overlap (1-280:20-291)
10 20 30 40
pF1KE0 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKV
.:::::.:::::::: .::.::.:: .:.::::::: :.:
CCDS41 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 SNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCA
:.:::::::::::.:: ..: ::::::..::: :: .::. : . :..:::::. .: :
CCDS41 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 EGLCTQDKTPSVSSINRVLRALQEDQGLPCTRLRSPAVLAPA-VLTPHSGSETPRGTHPG
::.: .: .::::::::..:. .. : . .: ::. ...: ..: : :
CCDS41 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTAS--P----PV
130 140 150 160 170
170 180 190 200 210
pF1KE0 TGHRNRTIFSPSQAEAL---EKEFQRGQYPDSVARGKLATATSLPE-DTVRVWFSNRRAK
.. : . : : : ... .. . ..:..:.. .. : :..: .
CCDS41 SSASNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFT
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE0 WRRQEKLKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALEPLGPSCYQLCWA
.. : : .. :. . : ... : : : . :.: : :.:. . : : .
CCDS41 QQQLEALDRVFERPSYPD---VFQASEHIKSEQGNEYSLP-ALTPGLDEVKSS---LSAS
240 250 260 270 280
280 290 300 310 320 330
pF1KE0 TAPERCLSDTPPKACLKPCWGHLPPQPNSLDSGLLCLPCPSSHCPLASLSGSQALLWPGC
: ::
CCDS41 TNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGN
290 300 310 320 330 340
>>CCDS7499.1 PAX2 gene_id:5076|Hs108|chr10 (396 aa)
initn: 658 init1: 550 opt: 565 Z-score: 444.4 bits: 90.9 E(32554): 2e-18
Smith-Waterman score: 596; 35.4% identity (58.6% similar) in 362 aa overlap (1-300:20-373)
10 20 30 40
pF1KE0 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKV
.:::::.:::::::: .::.::.:: .:.::::::: :.:
CCDS74 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 SNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCA
:.:::::::::::.:: ..: ::::::..::: :: .::. : . :..:::::. .: :
CCDS74 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
110 120 130 140 150
pF1KE0 EGLCTQDKTPSVSSINRVLRALQEDQGLPC-----TRLRSPA-VLAPAVLTP--HSGSET
::.: .: .::::::::..:. .. : : . .:. ...:.. .: :.:.
CCDS74 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND
130 140 150 160 170 180
160 170
pF1KE0 PRGTHPGTG------------HRNRTI-------------------------FSPSQAEA
: :.. .: .:.. . :. .: ::
CCDS74 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA
190 200 210 220 230 240
180 190 200 210 220
pF1KE0 LEKEFQRGQYPDSVA-----RGKLATATSLPE-----DTVRVWFSNRRAKWRRQEKLKWE
:.. :.: .::: ... .. ::: : :. .: . ...
CCDS74 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNP-ELGSNVSGT
250 260 270 280 290
230 240 250 260 270
pF1KE0 MQLPGAS----QGLTVPRVAPGIISAQQSPGSVPTAALPALEP---LGPSCYQLCWATAP
. : .. . :.: : . . : :: ::..: .. : .::: . . :
CCDS74 QTYPVVTGRDMASTTLPGYPPHVPPTGQ--GSYPTSTLAGMVPEAAVGPSSSLM---SKP
300 310 320 330 340 350
280 290 300 310 320 330
pF1KE0 ERCLSDTPPKACLKPCWGHLPPQPNSLDSGLLCLPCPSSHCPLASLSGSQALLWPGCPLL
: :...:: :..: . :
CCDS74 GRKLAEVPP--CVQPTGASSPATRTATPSTRPTTRLGDSATPPY
360 370 380 390
>>CCDS42736.1 PAX8 gene_id:7849|Hs108|chr2 (321 aa)
initn: 604 init1: 533 opt: 558 Z-score: 440.1 bits: 89.8 E(32554): 3.4e-18
Smith-Waterman score: 565; 38.3% identity (62.4% similar) in 303 aa overlap (1-290:13-311)
10 20 30 40
pF1KE0 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSK
.::::: :::::::: .::.:: :: .:.::::::: :.::.:::::
CCDS42 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 ILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQD
::::::.:: ..: ::::::..::: :: .:.. : . :..:::::. .: :::.: .:
CCDS42 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 KTPSVSSINRVLRA-LQEDQGLPCTRLRSPAVLAPA-VLTPHSG---SETPRGTHPGTGH
.::::::::..:. .:. .:: . :.:. .: : :. :.:.. :. .
CCDS42 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
170 180 190 200 210
pF1KE0 RNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRV-WFSNRRAK-----W
... .: . ..... .. . ...: :. .:. ::... . .
CCDS42 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 RRQEKLKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALEPLGPSC--YQLCW
.::. . :. ..: : : . : : : : :. :: :: .:
CCDS42 ERQH-YPEAYASPSHTKGEQGERWW-GPRCPDTHPTS-PPADRAAMPPL-PSQAWWQEVN
250 260 270 280 290
280 290 300 310 320 330
pF1KE0 ATAPERCLSDTPPKACLKPCWGHLPPQPNSLDSGLLCLPCPSSHCPLASLSGSQALLWPG
. : ::: :
CCDS42 TLAMPMATPPTPPTARPGASPTPAC
300 310 320
>>CCDS46398.1 PAX8 gene_id:7849|Hs108|chr2 (450 aa)
initn: 582 init1: 533 opt: 558 Z-score: 438.5 bits: 89.9 E(32554): 4.2e-18
Smith-Waterman score: 558; 50.6% identity (74.7% similar) in 178 aa overlap (1-173:13-190)
10 20 30 40
pF1KE0 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSK
.::::: :::::::: .::.:: :: .:.::::::: :.::.:::::
CCDS46 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 ILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQD
::::::.:: ..: ::::::..::: :: .:.. : . :..:::::. .: :::.: .:
CCDS46 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 KTPSVSSINRVLRA-LQEDQGLPCTRLRSPAVLAPA-VLTPHSG---SETPRGTHPGTGH
.::::::::..:. .:. .:: . :.:. .: : :. :.:.. :. .
CCDS46 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 RNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKL
... .:
CCDS46 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
190 200 210 220 230 240
343 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:31:20 2016 done: Sat Nov 5 04:31:21 2016
Total Scan time: 3.010 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]