Result of FASTA (omim) for
pF1KE0919
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0919, 305 aa
1>>>pF1KE0919 305 - 305 aa - 305 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4568+/-0.000334; mu= 4.2004+/- 0.021
mean_var=207.4463+/-43.191, 0's: 0 Z-trim(122.5): 23 B-trim: 1308 in 1/60
Lambda= 0.089047
statistics sampled from 40696 (40719) to 40696 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.477), width: 16
Scan time: 7.410
The best scores are: opt bits E(85289)
NP_958851 (OMIM: 601714) transcriptional enhancer ( 305) 2078 278.6 1.1e-74
NP_003204 (OMIM: 601714) transcriptional enhancer ( 434) 2078 278.7 1.4e-74
NP_958849 (OMIM: 601714) transcriptional enhancer ( 391) 1881 253.4 5.4e-67
NP_068780 (OMIM: 108985,189967) transcriptional en ( 426) 1529 208.2 2.3e-53
NP_003205 (OMIM: 603170) transcriptional enhancer ( 435) 1396 191.1 3.3e-48
XP_006723491 (OMIM: 601729) PREDICTED: transcripti ( 434) 1035 144.7 3e-34
XP_011525706 (OMIM: 601729) PREDICTED: transcripti ( 441) 1024 143.3 8.2e-34
NP_001243591 (OMIM: 601729) transcriptional enhanc ( 319) 687 99.9 6.9e-21
NP_001243588 (OMIM: 601729) transcriptional enhanc ( 450) 687 100.0 8.9e-21
NP_001243587 (OMIM: 601729) transcriptional enhanc ( 450) 687 100.0 8.9e-21
XP_011525705 (OMIM: 601729) PREDICTED: transcripti ( 450) 687 100.0 8.9e-21
XP_011525701 (OMIM: 601729) PREDICTED: transcripti ( 454) 687 100.0 9e-21
XP_011525703 (OMIM: 601729) PREDICTED: transcripti ( 454) 687 100.0 9e-21
XP_011525704 (OMIM: 601729) PREDICTED: transcripti ( 454) 687 100.0 9e-21
XP_011525700 (OMIM: 601729) PREDICTED: transcripti ( 454) 687 100.0 9e-21
XP_011525702 (OMIM: 601729) PREDICTED: transcripti ( 454) 687 100.0 9e-21
XP_005259391 (OMIM: 601729) PREDICTED: transcripti ( 411) 675 98.5 2.4e-20
NP_003589 (OMIM: 601729) transcriptional enhancer ( 447) 675 98.5 2.6e-20
NP_001243590 (OMIM: 601729) transcriptional enhanc ( 451) 675 98.5 2.6e-20
XP_006723487 (OMIM: 601729) PREDICTED: transcripti ( 451) 675 98.5 2.6e-20
NP_001243589 (OMIM: 601729) transcriptional enhanc ( 451) 675 98.5 2.6e-20
XP_006723492 (OMIM: 601729) PREDICTED: transcripti ( 261) 668 97.4 3.2e-20
>>NP_958851 (OMIM: 601714) transcriptional enhancer fact (305 aa)
initn: 2078 init1: 2078 opt: 2078 Z-score: 1462.0 bits: 278.6 E(85289): 1.1e-74
Smith-Waterman score: 2078; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KE0 MAAMSSAQIISATAFHSSMALARGPGRPAVSGFWQGALPGQAGTSHDVKPFSQQTYAVQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 MAAMSSAQIISATAFHSSMALARGPGRPAVSGFWQGALPGQAGTSHDVKPFSQQTYAVQP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PLPLPGFESPAGPAPSPSAPPAPPWQGRSVASSKLWMLEFSAFLEQQQDPDTYNKHLFVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 PLPLPGFESPAGPAPSPSAPPAPPWQGRSVASSKLWMLEFSAFLEQQQDPDTYNKHLFVH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IGQSSPSYSDPYLEAVDIRQIYDKFPEKKGGLKDLFERGPSNAFFLVKFWADLNTNIEDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 IGQSSPSYSDPYLEAVDIRQIYDKFPEKKGGLKDLFERGPSNAFFLVKFWADLNTNIEDE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 GSSFYGVSSQYESPENMIITCSTKVCSFGKQVVEKVETEYARYENGHYSYRIHRSPLCEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 GSSFYGVSSQYESPENMIITCSTKVCSFGKQVVEKVETEYARYENGHYSYRIHRSPLCEY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 MINFIHKLKHLPEKYMMNSVLENFTILQVVTNRDTQETLLCIAYVFEVSASEHGAQHHIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 MINFIHKLKHLPEKYMMNSVLENFTILQVVTNRDTQETLLCIAYVFEVSASEHGAQHHIY
250 260 270 280 290 300
pF1KE0 RLVKE
:::::
NP_958 RLVKE
>>NP_003204 (OMIM: 601714) transcriptional enhancer fact (434 aa)
initn: 2078 init1: 2078 opt: 2078 Z-score: 1459.9 bits: 278.7 E(85289): 1.4e-74
Smith-Waterman score: 2078; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:130-434)
10 20 30
pF1KE0 MAAMSSAQIISATAFHSSMALARGPGRPAV
::::::::::::::::::::::::::::::
NP_003 SHIQVLARRKAREIQAKLKDQAAKDKALQSMAAMSSAQIISATAFHSSMALARGPGRPAV
100 110 120 130 140 150
40 50 60 70 80 90
pF1KE0 SGFWQGALPGQAGTSHDVKPFSQQTYAVQPPLPLPGFESPAGPAPSPSAPPAPPWQGRSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SGFWQGALPGQAGTSHDVKPFSQQTYAVQPPLPLPGFESPAGPAPSPSAPPAPPWQGRSV
160 170 180 190 200 210
100 110 120 130 140 150
pF1KE0 ASSKLWMLEFSAFLEQQQDPDTYNKHLFVHIGQSSPSYSDPYLEAVDIRQIYDKFPEKKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ASSKLWMLEFSAFLEQQQDPDTYNKHLFVHIGQSSPSYSDPYLEAVDIRQIYDKFPEKKG
220 230 240 250 260 270
160 170 180 190 200 210
pF1KE0 GLKDLFERGPSNAFFLVKFWADLNTNIEDEGSSFYGVSSQYESPENMIITCSTKVCSFGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GLKDLFERGPSNAFFLVKFWADLNTNIEDEGSSFYGVSSQYESPENMIITCSTKVCSFGK
280 290 300 310 320 330
220 230 240 250 260 270
pF1KE0 QVVEKVETEYARYENGHYSYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLENFTILQVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QVVEKVETEYARYENGHYSYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLENFTILQVV
340 350 360 370 380 390
280 290 300
pF1KE0 TNRDTQETLLCIAYVFEVSASEHGAQHHIYRLVKE
:::::::::::::::::::::::::::::::::::
NP_003 TNRDTQETLLCIAYVFEVSASEHGAQHHIYRLVKE
400 410 420 430
>>NP_958849 (OMIM: 601714) transcriptional enhancer fact (391 aa)
initn: 1879 init1: 1879 opt: 1881 Z-score: 1323.8 bits: 253.4 E(85289): 5.4e-67
Smith-Waterman score: 1881; 96.9% identity (97.2% similar) in 287 aa overlap (21-305:105-391)
10 20 30 40
pF1KE0 MAAMSSAQIISATAFHSSMALARGPGRP--AVSGFWQGALPGQAGTSHDV
::: .: : ::::::::::::::::
NP_958 YGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKAREIQAKLKFWQGALPGQAGTSHDV
80 90 100 110 120 130
50 60 70 80 90 100
pF1KE0 KPFSQQTYAVQPPLPLPGFESPAGPAPSPSAPPAPPWQGRSVASSKLWMLEFSAFLEQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 KPFSQQTYAVQPPLPLPGFESPAGPAPSPSAPPAPPWQGRSVASSKLWMLEFSAFLEQQQ
140 150 160 170 180 190
110 120 130 140 150 160
pF1KE0 DPDTYNKHLFVHIGQSSPSYSDPYLEAVDIRQIYDKFPEKKGGLKDLFERGPSNAFFLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 DPDTYNKHLFVHIGQSSPSYSDPYLEAVDIRQIYDKFPEKKGGLKDLFERGPSNAFFLVK
200 210 220 230 240 250
170 180 190 200 210 220
pF1KE0 FWADLNTNIEDEGSSFYGVSSQYESPENMIITCSTKVCSFGKQVVEKVETEYARYENGHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 FWADLNTNIEDEGSSFYGVSSQYESPENMIITCSTKVCSFGKQVVEKVETEYARYENGHY
260 270 280 290 300 310
230 240 250 260 270 280
pF1KE0 SYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTNRDTQETLLCIAYVFEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 SYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTNRDTQETLLCIAYVFEV
320 330 340 350 360 370
290 300
pF1KE0 SASEHGAQHHIYRLVKE
:::::::::::::::::
NP_958 SASEHGAQHHIYRLVKE
380 390
>>NP_068780 (OMIM: 108985,189967) transcriptional enhanc (426 aa)
initn: 1498 init1: 1349 opt: 1529 Z-score: 1078.9 bits: 208.2 E(85289): 2.3e-53
Smith-Waterman score: 1529; 73.0% identity (88.1% similar) in 311 aa overlap (1-305:122-426)
10 20
pF1KE0 MAAMSSAQIISATAFHSSMALARG---PGR
:::::::::.::::.:....: : :
NP_068 SHIQVLARRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATAIHNKLGLP-GIPRPTF
100 110 120 130 140 150
30 40 50 60 70 80
pF1KE0 PAVSGFWQGALP-GQAGTSHDVKPFSQQTYAVQPPL--PLPGFESPAGPAPSPSAPPAPP
:.. ::: : . :: :.:.::::: ::.: .:: . :.:::: ..:::: .:
NP_068 PGAPGFWPGMIQTGQPGSSQDVKPFVQQAYPIQPAVTAPIPGFEPASAPAPS-----VPA
160 170 180 190 200
90 100 110 120 130 140
pF1KE0 WQGRSVASSKLWMLEFSAFLEQQQDPDTYNKHLFVHIGQSSPSYSDPYLEAVDIRQIYDK
:::::....:: ..:::::::::.:::.::::::::::... ::::: ::.:::::::::
NP_068 WQGRSIGTTKLRLVEFSAFLEQQRDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDK
210 220 230 240 250 260
150 160 170 180 190 200
pF1KE0 FPEKKGGLKDLFERGPSNAFFLVKFWADLNTNIEDEGSSFYGVSSQYESPENMIITCSTK
:::::::::.:: .::.::::::::::::: ::.:....::::.::::: ::: .:::::
NP_068 FPEKKGGLKELFGKGPQNAFFLVKFWADLNCNIQDDAGAFYGVTSQYESSENMTVTCSTK
270 280 290 300 310 320
210 220 230 240 250 260
pF1KE0 VCSFGKQVVEKVETEYARYENGHYSYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLENF
::::::::::::::::::.:::.. :::.:::.:::::::::::::::::::::::::::
NP_068 VCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENF
330 340 350 360 370 380
270 280 290 300
pF1KE0 TILQVVTNRDTQETLLCIAYVFEVSASEHGAQHHIYRLVKE
::: :::::::::::::.: ::::: ::::::::::::::.
NP_068 TILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD
390 400 410 420
>>NP_003205 (OMIM: 603170) transcriptional enhancer fact (435 aa)
initn: 1384 init1: 1273 opt: 1396 Z-score: 986.4 bits: 191.1 E(85289): 3.3e-48
Smith-Waterman score: 1396; 67.4% identity (85.9% similar) in 313 aa overlap (1-305:126-435)
10 20 30
pF1KE0 MAAMSSAQIISATAFHSSMALARGPGRPAV
::.::::::.::........ .: ::
NP_003 VLARKKVREYQVGIKAMNLDQVSKDKALQSMASMSSAQIVSASVLQNKFS-PPSPLPQAV
100 110 120 130 140 150
40 50 60 70 80
pF1KE0 ----SGFWQGA--LPGQAGTSHDVKPFSQQTYAVQPPLP--LPGFESPAGPAPSPSAPPA
: ::.. : : : :.:.:::.: .: .::::: : ..: : .: :: .: .
NP_003 FSTSSRFWSSPPLLGQQPGPSQDIKPFAQPAYPIQPPLPPTLSSYE-PLAPLPSAAAS-V
160 170 180 190 200 210
90 100 110 120 130 140
pF1KE0 PPWQGRSVASSKLWMLEFSAFLEQQQDPDTYNKHLFVHIGQSSPSYSDPYLEAVDIRQIY
: :: :..:::.: .::.:::.: :.:::::.:::::::::..:..::: :::::.::::
NP_003 PVWQDRTIASSRLRLLEYSAFMEVQRDPDTYSKHLFVHIGQTNPAFSDPPLEAVDVRQIY
220 230 240 250 260 270
150 160 170 180 190 200
pF1KE0 DKFPEKKGGLKDLFERGPSNAFFLVKFWADLNTNIEDEGSSFYGVSSQYESPENMIITCS
:::::::::::.:.:.:: :::::::::::::..:.. ..:::::::: : ..: :. :
NP_003 DKFPEKKGGLKELYEKGPPNAFFLVKFWADLNSTIQEGPGAFYGVSSQYSSADSMTISVS
280 290 300 310 320 330
210 220 230 240 250 260
pF1KE0 TKVCSFGKQVVEKVETEYARYENGHYSYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLE
:::::::::::::::::::: :::.. :::::::.:::::::::::::::::::::::::
NP_003 TKVCSFGKQVVEKVETEYARLENGRFVYRIHRSPMCEYMINFIHKLKHLPEKYMMNSVLE
340 350 360 370 380 390
270 280 290 300
pF1KE0 NFTILQVVTNRDTQETLLCIAYVFEVSASEHGAQHHIYRLVKE
:::::::::.::.::::: ::.:::::.::::::::.:.:::.
NP_003 NFTILQVVTSRDSQETLLVIAFVFEVSTSEHGAQHHVYKLVKD
400 410 420 430
>>XP_006723491 (OMIM: 601729) PREDICTED: transcriptional (434 aa)
initn: 1033 init1: 463 opt: 1035 Z-score: 735.8 bits: 144.7 E(85289): 3e-34
Smith-Waterman score: 1114; 55.3% identity (75.8% similar) in 318 aa overlap (1-305:132-434)
10 20 30
pF1KE0 MAAMSSAQIISATAFHSSMALARGPGRPAV
::.:::::.::: ....... :: .
XP_006 SHIQVLARRKSREIQSKLKDQVSKDKAFQTMATMSSAQLISAPSLQAKLG-PTGPQASEL
110 120 130 140 150 160
40 50 60 70 80
pF1KE0 SGFWQGALPGQAGTSHDVKPFSQQ--TYAVQPP-LPLPGFESPAGPAPSPSAPPAPP-WQ
::.:. : . ::::::: : .. :: :::.: : . .: : :.:: ::
XP_006 FQFWSGG-SGPPWNVPDVKPFSQTPFTLSLTPPSTDLPGYEPPQALSPLPPPTPSPPAWQ
170 180 190 200 210
90 100 110 120 130 140
pF1KE0 GRSVASSKLWMLEFSAFLEQQQDPDTYNKHLFVHIGQSSPSYSDPYLEAVDIRQIYDKFP
.:......: ..:::::.: . :.:..::::::.: :: . : ::.::.::::::::
XP_006 ARGLGTARLQLVEFSAFVEPPDAVDSYQRHLFVHISQHCPSPGAPPLESVDVRQIYDKFP
220 230 240 250 260 270
150 160 170 180 190
pF1KE0 EKKGGLKDLFERGPSNAFFLVKFWADLN--TNIEDEGSS-------FYGVSSQYESPENM
::::::..:..::: .:::::::::::: . :. :.. :::::::::: :.:
XP_006 EKKGGLRELYDRGPPHAFFLVKFWADLNWGPSGEEAGAGGSISSGGFYGVSSQYESLEHM
280 290 300 310 320 330
200 210 220 230 240 250
pF1KE0 IITCSTKVCSFGKQVVEKVETEYARYENGHYSYRIHRSPLCEYMINFIHKLKHLPEKYMM
.:::.: :: :. :.:.. ::. :::.:::..::.:::..:::.:::
XP_006 TLTCSSK-------------TERAQLEDGRFVYRLLRSPMCEYLVNFLHKLRQLPERYMM
340 350 360 370 380
260 270 280 290 300
pF1KE0 NSVLENFTILQVVTNRDTQETLLCIAYVFEVSASEHGAQHHIYRLVKE
:::::::::::::::::::: ::: :::::::.::.::::::::::..
XP_006 NSVLENFTILQVVTNRDTQELLLCTAYVFEVSTSERGAQHHIYRLVRD
390 400 410 420 430
>>XP_011525706 (OMIM: 601729) PREDICTED: transcriptional (441 aa)
initn: 1033 init1: 463 opt: 1024 Z-score: 728.1 bits: 143.3 E(85289): 8.2e-34
Smith-Waterman score: 1103; 54.9% identity (74.4% similar) in 324 aa overlap (1-305:136-441)
10 20 30
pF1KE0 MAAMSSAQIISATAFHSSMALARGPGRPAV
::.:::::.::: ...... :: : :
XP_011 VLARRKSREIQSKLKALNVDQVSKDKAFQTMATMSSAQLISAPSLQAKL----GPTGPQV
110 120 130 140 150 160
40 50 60 70 80
pF1KE0 SG------FWQGALPGQAGTSHDVKPFSQQ--TYAVQPP-LPLPGFESPAGPAPSPSAPP
::.:. : . ::::::: : .. :: :::.: : . .: : :
XP_011 VQASELFQFWSGG-SGPPWNVPDVKPFSQTPFTLSLTPPSTDLPGYEPPQALSPLPPPTP
170 180 190 200 210 220
90 100 110 120 130 140
pF1KE0 APP-WQGRSVASSKLWMLEFSAFLEQQQDPDTYNKHLFVHIGQSSPSYSDPYLEAVDIRQ
.:: ::.:......: ..:::::.: . :.:..::::::.: :: . : ::.::.::
XP_011 SPPAWQARGLGTARLQLVEFSAFVEPPDAVDSYQRHLFVHISQHCPSPGAPPLESVDVRQ
230 240 250 260 270 280
150 160 170 180 190
pF1KE0 IYDKFPEKKGGLKDLFERGPSNAFFLVKFWADLN--TNIEDEGSS-------FYGVSSQY
::::::::::::..:..::: .:::::::::::: . :. :.. ::::::::
XP_011 IYDKFPEKKGGLRELYDRGPPHAFFLVKFWADLNWGPSGEEAGAGGSISSGGFYGVSSQY
290 300 310 320 330 340
200 210 220 230 240 250
pF1KE0 ESPENMIITCSTKVCSFGKQVVEKVETEYARYENGHYSYRIHRSPLCEYMINFIHKLKHL
:: :.: .:::.: :: :. :.:.. ::. :::.:::..::.:::..:
XP_011 ESLEHMTLTCSSK-------------TERAQLEDGRFVYRLLRSPMCEYLVNFLHKLRQL
350 360 370 380
260 270 280 290 300
pF1KE0 PEKYMMNSVLENFTILQVVTNRDTQETLLCIAYVFEVSASEHGAQHHIYRLVKE
::.::::::::::::::::::::::: ::: :::::::.::.::::::::::..
XP_011 PERYMMNSVLENFTILQVVTNRDTQELLLCTAYVFEVSTSERGAQHHIYRLVRD
390 400 410 420 430 440
>>NP_001243591 (OMIM: 601729) transcriptional enhancer f (319 aa)
initn: 1132 init1: 655 opt: 687 Z-score: 496.0 bits: 99.9 E(85289): 6.9e-21
Smith-Waterman score: 1224; 59.0% identity (78.4% similar) in 324 aa overlap (1-305:1-319)
10 20 30 40 50
pF1KE0 MAAMSSAQIISATAFHSSMALARGPGRPAVSG------FWQGALPGQAGTSHDVKPFSQQ
::.:::::.::: ...... :: : : ::.:. : . :::::::
NP_001 MATMSSAQLISAPSLQAKL----GPTGPQVVQASELFQFWSGG-SGPPWNVPDVKPFSQT
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 --TYAVQPP-LPLPGFESPAGPAPSPSAPPAPP-WQGRSVASSKLWMLEFSAFLEQQQDP
: .. :: :::.: : . .: : :.:: ::.:......: ..:::::.: .
NP_001 PFTLSLTPPSTDLPGYEPPQALSPLPPPTPSPPAWQARGLGTARLQLVEFSAFVEPPDAV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 DTYNKHLFVHIGQSSPSYSDPYLEAVDIRQIYDKFPEKKGGLKDLFERGPSNAFFLVKFW
:.:..::::::.: :: . : ::.::.::::::::::::::..:..::: .::::::::
NP_001 DSYQRHLFVHISQHCPSPGAPPLESVDVRQIYDKFPEKKGGLRELYDRGPPHAFFLVKFW
120 130 140 150 160 170
180 190 200 210 220
pF1KE0 ADLN--TNIEDEGSS-------FYGVSSQYESPENMIITCSTKVCSFGKQVVEKVETEYA
:::: . :. :.. :::::::::: :.: .:::.:::::::::::::::: :
NP_001 ADLNWGPSGEEAGAGGSISSGGFYGVSSQYESLEHMTLTCSSKVCSFGKQVVEKVETERA
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE0 RYENGHYSYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTNRDTQETLLC
. :.:.. ::. :::.:::..::.:::..:::.::::::::::::::::::::::: :::
NP_001 QLEDGRFVYRLLRSPMCEYLVNFLHKLRQLPERYMMNSVLENFTILQVVTNRDTQELLLC
240 250 260 270 280 290
290 300
pF1KE0 IAYVFEVSASEHGAQHHIYRLVKE
:::::::.::.::::::::::..
NP_001 TAYVFEVSTSERGAQHHIYRLVRD
300 310
>>NP_001243588 (OMIM: 601729) transcriptional enhancer f (450 aa)
initn: 1132 init1: 655 opt: 687 Z-score: 494.0 bits: 100.0 E(85289): 8.9e-21
Smith-Waterman score: 1224; 59.0% identity (78.4% similar) in 324 aa overlap (1-305:132-450)
10 20 30
pF1KE0 MAAMSSAQIISATAFHSSMALARGPGRPAV
::.:::::.::: ...... :: : :
NP_001 SHIQVLARRKSREIQSKLKDQVSKDKAFQTMATMSSAQLISAPSLQAKL----GPTGPQV
110 120 130 140 150
40 50 60 70 80
pF1KE0 SG------FWQGALPGQAGTSHDVKPFSQQ--TYAVQPP-LPLPGFESPAGPAPSPSAPP
::.:. : . ::::::: : .. :: :::.: : . .: : :
NP_001 VQASELFQFWSGG-SGPPWNVPDVKPFSQTPFTLSLTPPSTDLPGYEPPQALSPLPPPTP
160 170 180 190 200 210
90 100 110 120 130 140
pF1KE0 APP-WQGRSVASSKLWMLEFSAFLEQQQDPDTYNKHLFVHIGQSSPSYSDPYLEAVDIRQ
.:: ::.:......: ..:::::.: . :.:..::::::.: :: . : ::.::.::
NP_001 SPPAWQARGLGTARLQLVEFSAFVEPPDAVDSYQRHLFVHISQHCPSPGAPPLESVDVRQ
220 230 240 250 260 270
150 160 170 180 190
pF1KE0 IYDKFPEKKGGLKDLFERGPSNAFFLVKFWADLN--TNIEDEGSS-------FYGVSSQY
::::::::::::..:..::: .:::::::::::: . :. :.. ::::::::
NP_001 IYDKFPEKKGGLRELYDRGPPHAFFLVKFWADLNWGPSGEEAGAGGSISSGGFYGVSSQY
280 290 300 310 320 330
200 210 220 230 240 250
pF1KE0 ESPENMIITCSTKVCSFGKQVVEKVETEYARYENGHYSYRIHRSPLCEYMINFIHKLKHL
:: :.: .:::.:::::::::::::::: :. :.:.. ::. :::.:::..::.:::..:
NP_001 ESLEHMTLTCSSKVCSFGKQVVEKVETERAQLEDGRFVYRLLRSPMCEYLVNFLHKLRQL
340 350 360 370 380 390
260 270 280 290 300
pF1KE0 PEKYMMNSVLENFTILQVVTNRDTQETLLCIAYVFEVSASEHGAQHHIYRLVKE
::.::::::::::::::::::::::: ::: :::::::.::.::::::::::..
NP_001 PERYMMNSVLENFTILQVVTNRDTQELLLCTAYVFEVSTSERGAQHHIYRLVRD
400 410 420 430 440 450
>>NP_001243587 (OMIM: 601729) transcriptional enhancer f (450 aa)
initn: 1132 init1: 655 opt: 687 Z-score: 494.0 bits: 100.0 E(85289): 8.9e-21
Smith-Waterman score: 1224; 59.0% identity (78.4% similar) in 324 aa overlap (1-305:132-450)
10 20 30
pF1KE0 MAAMSSAQIISATAFHSSMALARGPGRPAV
::.:::::.::: ...... :: : :
NP_001 SHIQVLARRKSREIQSKLKDQVSKDKAFQTMATMSSAQLISAPSLQAKL----GPTGPQV
110 120 130 140 150
40 50 60 70 80
pF1KE0 SG------FWQGALPGQAGTSHDVKPFSQQ--TYAVQPP-LPLPGFESPAGPAPSPSAPP
::.:. : . ::::::: : .. :: :::.: : . .: : :
NP_001 VQASELFQFWSGG-SGPPWNVPDVKPFSQTPFTLSLTPPSTDLPGYEPPQALSPLPPPTP
160 170 180 190 200 210
90 100 110 120 130 140
pF1KE0 APP-WQGRSVASSKLWMLEFSAFLEQQQDPDTYNKHLFVHIGQSSPSYSDPYLEAVDIRQ
.:: ::.:......: ..:::::.: . :.:..::::::.: :: . : ::.::.::
NP_001 SPPAWQARGLGTARLQLVEFSAFVEPPDAVDSYQRHLFVHISQHCPSPGAPPLESVDVRQ
220 230 240 250 260 270
150 160 170 180 190
pF1KE0 IYDKFPEKKGGLKDLFERGPSNAFFLVKFWADLN--TNIEDEGSS-------FYGVSSQY
::::::::::::..:..::: .:::::::::::: . :. :.. ::::::::
NP_001 IYDKFPEKKGGLRELYDRGPPHAFFLVKFWADLNWGPSGEEAGAGGSISSGGFYGVSSQY
280 290 300 310 320 330
200 210 220 230 240 250
pF1KE0 ESPENMIITCSTKVCSFGKQVVEKVETEYARYENGHYSYRIHRSPLCEYMINFIHKLKHL
:: :.: .:::.:::::::::::::::: :. :.:.. ::. :::.:::..::.:::..:
NP_001 ESLEHMTLTCSSKVCSFGKQVVEKVETERAQLEDGRFVYRLLRSPMCEYLVNFLHKLRQL
340 350 360 370 380 390
260 270 280 290 300
pF1KE0 PEKYMMNSVLENFTILQVVTNRDTQETLLCIAYVFEVSASEHGAQHHIYRLVKE
::.::::::::::::::::::::::: ::: :::::::.::.::::::::::..
NP_001 PERYMMNSVLENFTILQVVTNRDTQELLLCTAYVFEVSTSERGAQHHIYRLVRD
400 410 420 430 440 450
305 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:30:12 2016 done: Sat Nov 5 04:30:14 2016
Total Scan time: 7.410 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]