Result of FASTA (omim) for
pF1KE0913
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0913, 254 aa
1>>>pF1KE0913 254 - 254 aa - 254 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1798+/-0.000367; mu= 15.7304+/- 0.023
mean_var=81.9146+/-16.396, 0's: 0 Z-trim(113.7): 109 B-trim: 33 in 1/57
Lambda= 0.141708
statistics sampled from 23062 (23183) to 23062 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.272), width: 16
Scan time: 6.690
The best scores are: opt bits E(85289)
NP_061984 (OMIM: 142860) HLA class II histocompati ( 254) 1707 358.6 6.2e-99
NP_291032 (OMIM: 142880) HLA class II histocompati ( 260) 998 213.7 2.7e-55
NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260) 998 213.7 2.7e-55
NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260) 998 213.7 2.7e-55
NP_002110 (OMIM: 142930) HLA class II histocompati ( 250) 943 202.4 6.4e-52
NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255) 929 199.5 4.7e-51
NP_064440 (OMIM: 613503) HLA class II histocompati ( 255) 901 193.8 2.5e-49
XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA ( 206) 714 155.5 6.9e-38
NP_006111 (OMIM: 142855) HLA class II histocompati ( 261) 339 78.9 9.8e-15
NP_002109 (OMIM: 142856) HLA class II histocompati ( 263) 263 63.4 4.7e-10
NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 254 61.5 1.7e-09
NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 236 57.9 2.2e-08
XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 236 57.9 2.2e-08
XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 234 57.5 2.8e-08
NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 233 57.3 3.3e-08
NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227) 228 56.2 6e-08
XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 225 55.6 1e-07
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 224 55.5 1.4e-07
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 224 55.5 1.4e-07
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 224 55.5 1.5e-07
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 224 55.5 1.5e-07
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 220 54.6 2.1e-07
NP_001230890 (OMIM: 123400,126200,212750,604305) H ( 269) 219 54.4 2.4e-07
NP_001230891 (OMIM: 123400,126200,212750,604305) H ( 261) 217 54.0 3.2e-07
NP_002114 (OMIM: 123400,126200,212750,604305) HLA ( 261) 217 54.0 3.2e-07
XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219) 216 53.7 3.2e-07
NP_002116 (OMIM: 604776) major histocompatibility ( 266) 215 53.6 4.3e-07
XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276) 215 53.6 4.4e-07
XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 213 53.1 5.4e-07
XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 213 53.1 5.4e-07
NP_072049 (OMIM: 612735) major histocompatibility ( 266) 209 52.4 1e-06
NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 209 52.4 1e-06
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 208 52.1 1.1e-06
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 205 51.5 1.6e-06
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 202 50.7 1.9e-06
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 205 51.6 2e-06
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 205 51.6 2.1e-06
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 205 51.7 2.3e-06
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 205 51.7 2.5e-06
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 205 51.7 2.5e-06
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 205 51.7 2.6e-06
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 198 50.3 6.8e-06
NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242) 194 49.3 7.8e-06
NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 194 49.3 7.9e-06
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 194 49.4 9.9e-06
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 194 49.4 1e-05
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 194 49.4 1.1e-05
NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 194 49.4 1.1e-05
NP_004039 (OMIM: 105200,109700,241600) beta-2-micr ( 119) 188 47.8 1.1e-05
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 190 48.6 1.9e-05
>>NP_061984 (OMIM: 142860) HLA class II histocompatibili (254 aa)
initn: 1707 init1: 1707 opt: 1707 Z-score: 1897.1 bits: 358.6 E(85289): 6.2e-99
Smith-Waterman score: 1707; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254)
10 20 30 40 50 60
pF1KE0 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 MAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 STEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFIIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 STEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFIIK
190 200 210 220 230 240
250
pF1KE0 GLRKSNAAERRGPL
::::::::::::::
NP_061 GLRKSNAAERRGPL
250
>>NP_291032 (OMIM: 142880) HLA class II histocompatibili (260 aa)
initn: 1002 init1: 976 opt: 998 Z-score: 1113.6 bits: 213.7 E(85289): 2.7e-55
Smith-Waterman score: 998; 59.9% identity (80.6% similar) in 247 aa overlap (8-254:14-260)
10 20 30 40 50
pF1KE0 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGD
.: . .: :.: . . ::: .:: : : . .:::::.:: :
NP_291 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDED
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 EIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEV
:.:.::. ::::::.:::::. ::::::.:::::. . ::. . .:::.: :: ::::
NP_291 EMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 TVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFH
::. . :::: .::.::: :::: :::.::::: ::. :: ::.:..:::: :. :.:::
NP_291 TVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 YLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIG
:: :.::.:: :::::::::::.::::::: . : .:::::.:.:::::..::::::.:
NP_291 YLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVG
190 200 210 220 230 240
240 250
pF1KE0 TIFIIKGLRKSNAAERRGPL
:..:::.::... . .: :
NP_291 TVLIIKSLRSGHDPRAQGTL
250 260
>>NP_001229453 (OMIM: 142880) HLA class II histocompatib (260 aa)
initn: 1002 init1: 976 opt: 998 Z-score: 1113.6 bits: 213.7 E(85289): 2.7e-55
Smith-Waterman score: 998; 59.9% identity (80.6% similar) in 247 aa overlap (8-254:14-260)
10 20 30 40 50
pF1KE0 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGD
.: . .: :.: . . ::: .:: : : . .:::::.:: :
NP_001 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDED
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 EIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEV
:.:.::. ::::::.:::::. ::::::.:::::. . ::. . .:::.: :: ::::
NP_001 EMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 TVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFH
::. . :::: .::.::: :::: :::.::::: ::. :: ::.:..:::: :. :.:::
NP_001 TVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 YLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIG
:: :.::.:: :::::::::::.::::::: . : .:::::.:.:::::..::::::.:
NP_001 YLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVG
190 200 210 220 230 240
240 250
pF1KE0 TIFIIKGLRKSNAAERRGPL
:..:::.::... . .: :
NP_001 TVLIIKSLRSGHDPRAQGTL
250 260
>>NP_001229454 (OMIM: 142880) HLA class II histocompatib (260 aa)
initn: 1002 init1: 976 opt: 998 Z-score: 1113.6 bits: 213.7 E(85289): 2.7e-55
Smith-Waterman score: 998; 59.9% identity (80.6% similar) in 247 aa overlap (8-254:14-260)
10 20 30 40 50
pF1KE0 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGD
.: . .: :.: . . ::: .:: : : . .:::::.:: :
NP_001 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDED
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 EIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEV
:.:.::. ::::::.:::::. ::::::.:::::. . ::. . .:::.: :: ::::
NP_001 EMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 TVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFH
::. . :::: .::.::: :::: :::.::::: ::. :: ::.:..:::: :. :.:::
NP_001 TVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 YLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIG
:: :.::.:: :::::::::::.::::::: . : .:::::.:.:::::..::::::.:
NP_001 YLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVG
190 200 210 220 230 240
240 250
pF1KE0 TIFIIKGLRKSNAAERRGPL
:..:::.::... . .: :
NP_001 TVLIIKSLRSGHDPRAQGTL
250 260
>>NP_002110 (OMIM: 142930) HLA class II histocompatibili (250 aa)
initn: 1000 init1: 887 opt: 943 Z-score: 1053.1 bits: 202.4 E(85289): 6.4e-52
Smith-Waterman score: 943; 54.7% identity (78.9% similar) in 247 aa overlap (1-246:1-247)
10 20 30 40 50
pF1KE0 MAISGVPVLGFFIIAVLMSAQESWAIKEEHV-IIQAEFYLNPDQSGEFMFDFDGDEIFHV
::. . :::: . .:.: ::. : : .:. :: . ::.: .:: ...: :
NP_002 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN
:. :.:.:::: ::: :: :. ::.::.::. ::.:.:...::: . ::::.:::: .
NP_002 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL
: ::: .::.:::..:.. :::.:.::::::. :: ::..: : . ::::::::::::.
NP_002 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII
::.::::::.::::::: :::.:::...: : :.. :..::::::..::::...::..::
NP_002 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII
190 200 210 220 230 240
240 250
pF1KE0 KGLRKSNAAERRGPL
: :.
NP_002 MGTYVSSVPR
250
>>NP_002113 (OMIM: 146880,212750) HLA class II histocomp (255 aa)
initn: 931 init1: 913 opt: 929 Z-score: 1037.5 bits: 199.5 E(85289): 4.7e-51
Smith-Waterman score: 929; 53.3% identity (78.0% similar) in 255 aa overlap (1-254:1-255)
10 20 30 40 50
pF1KE0 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVI-IQAEFYLNPDQSGEFMFDFDGDEIFHV
: .. . .:: . ....:: . : .:: ...: ::.. .::::: :.:
NP_002 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN
:. .:::.:: ::..:..:. :::: :.:: : ::.:: :: : : :: :::::...
NP_002 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL
::: : .::.:::..:.. :::::.::: ::. :: ::::: :: . :: : :. :: ::
NP_002 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII
::....:::.:::::::.::::::: . :.:. : ::.:::::::.:::.::..::.:::
NP_002 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII
190 200 210 220 230 240
240 250
pF1KE0 KGLRKSNAAERRGPL
.:::. .:....:::
NP_002 QGLRSVGASRHQGPL
250
>>NP_064440 (OMIM: 613503) HLA class II histocompatibili (255 aa)
initn: 976 init1: 882 opt: 901 Z-score: 1006.6 bits: 193.8 E(85289): 2.5e-49
Smith-Waterman score: 901; 52.2% identity (77.3% similar) in 255 aa overlap (1-254:1-255)
10 20 30 40 50
pF1KE0 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVI-IQAEFYLNPDQSGEFMFDFDGDEIFHV
: .. . .:: . ....:: . : .:: ..:: . ::.. .::::: :.:
NP_064 MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN
:. :::::.: :..: ::. :.:: :.:: : .::.: ..:: : :: :::::...
NP_064 DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL
:: : .::.:::..:.. :::::.::: ::. :: ::::: :: . :: : :. :: ::
NP_064 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII
::....:::.::::::::::::::: . :.:. : ::..::::::.:::.::..::.:::
NP_064 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII
190 200 210 220 230 240
240 250
pF1KE0 KGLRKSNAAERRGPL
.:::. .:....: :
NP_064 QGLRSVGASRHQGLL
250
>>XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA clas (206 aa)
initn: 716 init1: 698 opt: 714 Z-score: 801.2 bits: 155.5 E(85289): 6.9e-38
Smith-Waterman score: 714; 52.0% identity (75.0% similar) in 204 aa overlap (1-203:1-204)
10 20 30 40 50
pF1KE0 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVI-IQAEFYLNPDQSGEFMFDFDGDEIFHV
: .. . .:: . ....:: . : .:: ...: ::.. .::::: :.:
XP_006 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN
:. .:::.:: ::..:..:. :::: :.:: : ::.:: :: : : :: :::::...
XP_006 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL
::: : .::.:::..:.. :::::.::: ::. :: ::::: :: . :: : :. :: ::
XP_006 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII
::....:::.:::::::.::::::
XP_006 PSADEIYDCKVEHWGLDQPLLKHWVE
190 200
>>NP_006111 (OMIM: 142855) HLA class II histocompatibili (261 aa)
initn: 199 init1: 126 opt: 339 Z-score: 385.5 bits: 78.9 E(85289): 9.8e-15
Smith-Waterman score: 341; 28.9% identity (58.1% similar) in 246 aa overlap (13-239:14-252)
10 20 30 40
pF1KE0 MAISGVPVLGFFIIAVLMSAQESWAIKE-----------EHVIIQAEFYLNPDQSGEFM
.. .: .:::. : .:..... . . . : .
NP_006 MGHEQNQGAALLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 FDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKR-----SN
.: :..: :.... : :: ::. .: . :: : :: : : .. ..
NP_006 EAYDEDQLFFFDFSQNTRVPRLPEFADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDG
70 80 90 100 110
110 120 130 140 150 160
pF1KE0 YTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFL
:.. : . :.: .:.:. .::.:.::.... ::...:.: ... :: : . : :.
NP_006 KIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPVE-GFGPT-FV
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE0 PREDHL-FRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAP-SPLP-ETTENVVC
: : :. : :: : : :...: : : . .: .: . :: . :::.:
NP_006 SAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYW---VPRNALPSDLLENVLC
180 190 200 210 220 230
230 240 250
pF1KE0 ALGLTVGLVGIIIGTIFIIKGLRKSNAAERRGPL
.... .:..:::.: ..::
NP_006 GVAFGLGVLGIIVGIVLIIYFRKPCSGD
240 250 260
>>NP_002109 (OMIM: 142856) HLA class II histocompatibili (263 aa)
initn: 241 init1: 137 opt: 263 Z-score: 301.5 bits: 63.4 E(85289): 4.7e-10
Smith-Waterman score: 263; 36.2% identity (59.1% similar) in 127 aa overlap (111-236:114-238)
90 100 110 120 130 140
pF1KE0 AQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPP
:: : : ..: . ::: .: :.. : :
NP_002 DTLMQRLRNGLQNCATHTQPFWGSLTNRTRPPSVQVAKTTPFNTREPVMLACYVWGFYPA
90 100 110 120 130 140
150 160 170 180 190
pF1KE0 VVNVTWLRNGKPVTTGVS-ETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPL
:..:: .::: : : . . : : .. . .: . :: :.: : ::: : ::.
NP_002 EVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHTGAPEPI
150 160 170 180 190 200
200 210 220 230 240 250
pF1KE0 LKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFIIKGLRKSNAAERRGPL
:. : . ::. .: . : :. : .::. . .:.:
NP_002 LRDWT-PGLSPM-QTLKVSVSAVTLGLGLIIFSLGVISWRRAGHSSYTPLPGSNYSEGWH
210 220 230 240 250 260
NP_002 IS
254 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:28:27 2016 done: Sat Nov 5 04:28:28 2016
Total Scan time: 6.690 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]