FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0908, 225 aa
  1>>>pF1KE0908 225 - 225 aa - 225 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1838+/-0.000252; mu= 16.2811+/- 0.016
 mean_var=77.9243+/-15.676, 0's: 0 Z-trim(121.8): 7  B-trim: 0 in 0/61
 Lambda= 0.145291
 statistics sampled from 38925 (38935) to 38925 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.457), width:  16
 Scan time:  6.930

The best scores are:                                      opt bits E(85289)
NP_037378 (OMIM: 607672,610313) cardiotrophin-like ( 225) 1579 339.3 3.2e-93
NP_001159684 (OMIM: 607672,610313) cardiotrophin-l ( 215) 1503 323.3 1.9e-88


>>NP_037378 (OMIM: 607672,610313) cardiotrophin-like cyt  (225 aa)
 initn: 1579 init1: 1579 opt: 1579  Z-score: 1794.6  bits: 339.3 E(85289): 3.2e-93
Smith-Waterman score: 1579; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KE0 MDLRAGDSWGMLACLCTVLWHLPAVPALNRTGDPGPGPSIQKTYDLTRYLEHQLRSLAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MDLRAGDSWGMLACLCTVLWHLPAVPALNRTGDPGPGPSIQKTYDLTRYLEHQLRSLAGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 YLNYLGPPFNEPDFNPPRLGAETLPRATVDLEVWRSLNDKLRLTQNYEAYSHLLCYLRGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 YLNYLGPPFNEPDFNPPRLGAETLPRATVDLEVWRSLNDKLRLTQNYEAYSHLLCYLRGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NRQAATAELRRSLAHFCTSLQGLLGSIAGVMAALGYPLPQPLPGTEPTWTPGPAHSDFLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 NRQAATAELRRSLAHFCTSLQGLLGSIAGVMAALGYPLPQPLPGTEPTWTPGPAHSDFLQ
              130       140       150       160       170       180

              190       200       210       220     
pF1KE0 KMDDFWLLKELQTWLWRSAKDFNRLKKKMQPPAAAVTLHLGAHGF
       :::::::::::::::::::::::::::::::::::::::::::::
NP_037 KMDDFWLLKELQTWLWRSAKDFNRLKKKMQPPAAAVTLHLGAHGF
              190       200       210       220     

>>NP_001159684 (OMIM: 607672,610313) cardiotrophin-like   (215 aa)
 initn: 1503 init1: 1503 opt: 1503  Z-score: 1708.8  bits: 323.3 E(85289): 1.9e-88
Smith-Waterman score: 1503; 100.0% identity (100.0% similar) in 215 aa overlap (11-225:1-215)

               10        20        30        40        50        60
pF1KE0 MDLRAGDSWGMLACLCTVLWHLPAVPALNRTGDPGPGPSIQKTYDLTRYLEHQLRSLAGT
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001           MLACLCTVLWHLPAVPALNRTGDPGPGPSIQKTYDLTRYLEHQLRSLAGT
                         10        20        30        40        50

               70        80        90       100       110       120
pF1KE0 YLNYLGPPFNEPDFNPPRLGAETLPRATVDLEVWRSLNDKLRLTQNYEAYSHLLCYLRGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLNYLGPPFNEPDFNPPRLGAETLPRATVDLEVWRSLNDKLRLTQNYEAYSHLLCYLRGL
               60        70        80        90       100       110

              130       140       150       160       170       180
pF1KE0 NRQAATAELRRSLAHFCTSLQGLLGSIAGVMAALGYPLPQPLPGTEPTWTPGPAHSDFLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRQAATAELRRSLAHFCTSLQGLLGSIAGVMAALGYPLPQPLPGTEPTWTPGPAHSDFLQ
              120       130       140       150       160       170

              190       200       210       220     
pF1KE0 KMDDFWLLKELQTWLWRSAKDFNRLKKKMQPPAAAVTLHLGAHGF
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 KMDDFWLLKELQTWLWRSAKDFNRLKKKMQPPAAAVTLHLGAHGF
              180       190       200       210     




225 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:26:56 2016 done: Sat Nov  5 04:26:57 2016
 Total Scan time:  6.930 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]