FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0908, 225 aa
  1>>>pF1KE0908 225 - 225 aa - 225 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2723+/-0.000547; mu= 15.8453+/- 0.033
 mean_var=76.3612+/-15.417, 0's: 0 Z-trim(114.8): 9  B-trim: 83 in 1/53
 Lambda= 0.146770
 statistics sampled from 15307 (15314) to 15307 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.47), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS31617.1 CLCF1 gene_id:23529|Hs108|chr11        ( 225) 1579 342.5 1.3e-94
CCDS53666.1 CLCF1 gene_id:23529|Hs108|chr11        ( 215) 1503 326.4 8.8e-90


>>CCDS31617.1 CLCF1 gene_id:23529|Hs108|chr11             (225 aa)
 initn: 1579 init1: 1579 opt: 1579  Z-score: 1812.0  bits: 342.5 E(32554): 1.3e-94
Smith-Waterman score: 1579; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KE0 MDLRAGDSWGMLACLCTVLWHLPAVPALNRTGDPGPGPSIQKTYDLTRYLEHQLRSLAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MDLRAGDSWGMLACLCTVLWHLPAVPALNRTGDPGPGPSIQKTYDLTRYLEHQLRSLAGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 YLNYLGPPFNEPDFNPPRLGAETLPRATVDLEVWRSLNDKLRLTQNYEAYSHLLCYLRGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YLNYLGPPFNEPDFNPPRLGAETLPRATVDLEVWRSLNDKLRLTQNYEAYSHLLCYLRGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NRQAATAELRRSLAHFCTSLQGLLGSIAGVMAALGYPLPQPLPGTEPTWTPGPAHSDFLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NRQAATAELRRSLAHFCTSLQGLLGSIAGVMAALGYPLPQPLPGTEPTWTPGPAHSDFLQ
              130       140       150       160       170       180

              190       200       210       220     
pF1KE0 KMDDFWLLKELQTWLWRSAKDFNRLKKKMQPPAAAVTLHLGAHGF
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KMDDFWLLKELQTWLWRSAKDFNRLKKKMQPPAAAVTLHLGAHGF
              190       200       210       220     

>>CCDS53666.1 CLCF1 gene_id:23529|Hs108|chr11             (215 aa)
 initn: 1503 init1: 1503 opt: 1503  Z-score: 1725.3  bits: 326.4 E(32554): 8.8e-90
Smith-Waterman score: 1503; 100.0% identity (100.0% similar) in 215 aa overlap (11-225:1-215)

               10        20        30        40        50        60
pF1KE0 MDLRAGDSWGMLACLCTVLWHLPAVPALNRTGDPGPGPSIQKTYDLTRYLEHQLRSLAGT
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53           MLACLCTVLWHLPAVPALNRTGDPGPGPSIQKTYDLTRYLEHQLRSLAGT
                         10        20        30        40        50

               70        80        90       100       110       120
pF1KE0 YLNYLGPPFNEPDFNPPRLGAETLPRATVDLEVWRSLNDKLRLTQNYEAYSHLLCYLRGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YLNYLGPPFNEPDFNPPRLGAETLPRATVDLEVWRSLNDKLRLTQNYEAYSHLLCYLRGL
               60        70        80        90       100       110

              130       140       150       160       170       180
pF1KE0 NRQAATAELRRSLAHFCTSLQGLLGSIAGVMAALGYPLPQPLPGTEPTWTPGPAHSDFLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NRQAATAELRRSLAHFCTSLQGLLGSIAGVMAALGYPLPQPLPGTEPTWTPGPAHSDFLQ
              120       130       140       150       160       170

              190       200       210       220     
pF1KE0 KMDDFWLLKELQTWLWRSAKDFNRLKKKMQPPAAAVTLHLGAHGF
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KMDDFWLLKELQTWLWRSAKDFNRLKKKMQPPAAAVTLHLGAHGF
              180       190       200       210     




225 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:26:56 2016 done: Sat Nov  5 04:26:56 2016
 Total Scan time:  2.540 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]