Result of FASTA (ccds) for
pF1KE0903
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0903, 168 aa
1>>>pF1KE0903 168 - 168 aa - 168 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6692+/-0.000961; mu= 0.0191+/- 0.055
mean_var=228.1245+/-53.155, 0's: 0 Z-trim(109.7): 174 B-trim: 0 in 0/51
Lambda= 0.084916
statistics sampled from 10872 (11067) to 10872 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.34), width: 16
Scan time: 1.700
The best scores are: opt bits E(32554)
CCDS75774.1 STK3 gene_id:6788|Hs108|chr8 ( 380) 766 106.6 1.7e-23
CCDS47900.1 STK3 gene_id:6788|Hs108|chr8 ( 491) 764 106.5 2.4e-23
CCDS59108.1 STK3 gene_id:6788|Hs108|chr8 ( 519) 703 99.0 4.3e-21
CCDS13341.1 STK4 gene_id:6789|Hs108|chr20 ( 487) 687 97.1 1.6e-20
>>CCDS75774.1 STK3 gene_id:6788|Hs108|chr8 (380 aa)
initn: 803 init1: 765 opt: 766 Z-score: 535.4 bits: 106.6 E(32554): 1.7e-23
Smith-Waterman score: 766; 96.0% identity (97.6% similar) in 124 aa overlap (1-123:1-124)
10 20 30 40 50 60
pF1KE0 MEQPPAPKSKLKKLSEDSLTKQPEEVFDVLEKLGEGSYGSVFKAIHKESGQVVAIKQVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MEQPPAPKSKLKKLSEDSLTKQPEEVFDVLEKLGEGSYGSVFKAIHKESGQVVAIKQVPV
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 ESDLQEIIKEISIMQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTG-F
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::. :
CCDS75 ESDLQEIIKEISIMQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTAIF
70 80 90 100 110 120
120 130 140 150 160
pF1KE0 LTDTTEGSASCDLRMDLTLFHLGAEFLHYLLLYEADPLSCVFSLLVFSV
. :
CCDS75 MIPTNPPPTFRKPELWSDDFTDFVKKCLVKNPEQRATATQLLQHPFIKNAKPVSILRDLI
130 140 150 160 170 180
>>CCDS47900.1 STK3 gene_id:6788|Hs108|chr8 (491 aa)
initn: 764 init1: 764 opt: 764 Z-score: 532.8 bits: 106.5 E(32554): 2.4e-23
Smith-Waterman score: 770; 83.2% identity (86.6% similar) in 149 aa overlap (1-149:1-140)
10 20 30 40 50 60
pF1KE0 MEQPPAPKSKLKKLSEDSLTKQPEEVFDVLEKLGEGSYGSVFKAIHKESGQVVAIKQVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MEQPPAPKSKLKKLSEDSLTKQPEEVFDVLEKLGEGSYGSVFKAIHKESGQVVAIKQVPV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ESDLQEIIKEISIMQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTGFL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ESDLQEIIKEISIMQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKT---
70 80 90 100 110
130 140 150 160
pF1KE0 TDTTEGSASCDLRMDLTLFHLGAEFLHYLLLYEADPLSCVFSLLVFSV
: . :. : : :.::..
CCDS47 --LIEDEIATILKSTLK----GLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQL
120 130 140 150 160 170
>>CCDS59108.1 STK3 gene_id:6788|Hs108|chr8 (519 aa)
initn: 703 init1: 703 opt: 703 Z-score: 492.1 bits: 99.0 E(32554): 4.3e-21
Smith-Waterman score: 709; 82.3% identity (85.8% similar) in 141 aa overlap (9-149:37-168)
10 20 30
pF1KE0 MEQPPAPKSKLKKLSEDSLTKQPEEVFDVLEKLGEGSY
::::::::::::::::::::::::::::::
CCDS59 SGITICLRNGAASVFKKKEWSTQGEENKQDSKLKKLSEDSLTKQPEEVFDVLEKLGEGSY
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 GSVFKAIHKESGQVVAIKQVPVESDLQEIIKEISIMQQCDSPYVVKYYGSYFKNTDLWIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GSVFKAIHKESGQVVAIKQVPVESDLQEIIKEISIMQQCDSPYVVKYYGSYFKNTDLWIV
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 MEYCGAGSVSDIIRLRNKTGFLTDTTEGSASCDLRMDLTLFHLGAEFLHYLLLYEADPLS
::::::::::::::::::: : . :. : : :.::..
CCDS59 MEYCGAGSVSDIIRLRNKT-----LIEDEIATILKSTLK----GLEYLHFMRKIHRDIKA
130 140 150 160 170
160
pF1KE0 CVFSLLVFSV
CCDS59 GNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGI
180 190 200 210 220 230
>>CCDS13341.1 STK4 gene_id:6789|Hs108|chr20 (487 aa)
initn: 687 init1: 687 opt: 687 Z-score: 481.8 bits: 97.1 E(32554): 1.6e-20
Smith-Waterman score: 697; 77.6% identity (86.0% similar) in 143 aa overlap (7-149:10-143)
10 20 30 40 50
pF1KE0 MEQPPAPKSKLKKLSEDSLTKQPEEVFDVLEKLGEGSYGSVFKAIHKESGQVVAIKQ
:. .::::.::::::::::::::::::::::::::.::::::.::.:::::
CCDS13 METVQLRNPPRRQLKKLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 VPVESDLQEIIKEISIMQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKT
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS13 VPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKT
70 80 90 100 110 120
120 130 140 150 160
pF1KE0 GFLTDTTEGSASCDLRMDLTLFHLGAEFLHYLLLYEADPLSCVFSLLVFSV
:: . :. : : :.::..
CCDS13 -----LTEDEIATILQSTLK----GLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVA
130 140 150 160 170
CCDS13 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMR
180 190 200 210 220 230
168 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:25:09 2016 done: Sat Nov 5 04:25:09 2016
Total Scan time: 1.700 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]