FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0901, 134 aa
  1>>>pF1KE0901 134 - 134 aa - 134 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9020+/-0.000281; mu= 13.1095+/- 0.018
 mean_var=57.6064+/-11.612, 0's: 0 Z-trim(118.0): 3  B-trim: 0 in 0/54
 Lambda= 0.168981
 statistics sampled from 30499 (30502) to 30499 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.358), width:  16
 Scan time:  4.800

The best scores are:                                      opt bits E(85289)
NP_054753 (OMIM: 609189) histone chaperone ASF1A [ ( 204)  894 225.5 3.2e-59
NP_060624 (OMIM: 609190) histone chaperone ASF1B [ ( 202)  585 150.1 1.5e-36


>>NP_054753 (OMIM: 609189) histone chaperone ASF1A [Homo  (204 aa)
 initn: 894 init1: 894 opt: 894  Z-score: 1184.3  bits: 225.5 E(85289): 3.2e-59
Smith-Waterman score: 894; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:71-204)

                                             10        20        30
pF1KE0                               MFVFQADAPNPGLIPDADAVGVTVVLITCT
                                     ::::::::::::::::::::::::::::::
NP_054 KIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCT
               50        60        70        80        90       100

               40        50        60        70        80        90
pF1KE0 YRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 YRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKL
              110       120       130       140       150       160

              100       110       120       130    
pF1KE0 EDAESSNPNLQSLLSTDALPSASKGWSTSENSLNVMLESHMDCM
       ::::::::::::::::::::::::::::::::::::::::::::
NP_054 EDAESSNPNLQSLLSTDALPSASKGWSTSENSLNVMLESHMDCM
              170       180       190       200    

>>NP_060624 (OMIM: 609190) histone chaperone ASF1B [Homo  (202 aa)
 initn: 603 init1: 562 opt: 585  Z-score: 777.2  bits: 150.1 E(85289): 1.5e-36
Smith-Waterman score: 585; 65.7% identity (82.1% similar) in 134 aa overlap (1-134:71-202)

                                             10        20        30
pF1KE0                               MFVFQADAPNPGLIPDADAVGVTVVLITCT
                                     :::::::::::.:::..:::::::::::::
NP_060 KIIYVGSAESEEFDQILDSVLVGPVPAGRHMFVFQADAPNPSLIPETDAVGVTVVLITCT
               50        60        70        80        90       100

               40        50        60        70        80        90
pF1KE0 YRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKL
       :.::::::::::::::: . :::::::.:::::.:::::::::::::::::::..: ..:
NP_060 YHGQEFIRVGYYVNNEYLNPELRENPPMKPDFSQLQRNILASNPRVTRFHINWDNNMDRL
              110       120       130       140       150       160

              100       110       120       130    
pF1KE0 EDAESSNPNLQSLLSTDALPSASKGWSTSENSLNVMLESHMDCM
       :  :...:.:   :  .  :   :: .      ... :. :::.
NP_060 EAIETQDPSLGCGLPLNCTP--IKGLGLPGCIPGLLPENSMDCI
              170       180         190       200  




134 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:24:12 2016 done: Sat Nov  5 04:24:13 2016
 Total Scan time:  4.800 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]