FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0901, 134 aa
  1>>>pF1KE0901 134 - 134 aa - 134 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2725+/-0.000603; mu= 10.9899+/- 0.037
 mean_var=57.2951+/-11.420, 0's: 0 Z-trim(110.7): 6  B-trim: 122 in 1/51
 Lambda= 0.169440
 statistics sampled from 11774 (11778) to 11774 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.362), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS47469.1 ASF1A gene_id:25842|Hs108|chr6         ( 204)  894 226.0 8.1e-60
CCDS12306.1 ASF1B gene_id:55723|Hs108|chr19        ( 202)  585 150.5 4.4e-37


>>CCDS47469.1 ASF1A gene_id:25842|Hs108|chr6              (204 aa)
 initn: 894 init1: 894 opt: 894  Z-score: 1187.4  bits: 226.0 E(32554): 8.1e-60
Smith-Waterman score: 894; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:71-204)

                                             10        20        30
pF1KE0                               MFVFQADAPNPGLIPDADAVGVTVVLITCT
                                     ::::::::::::::::::::::::::::::
CCDS47 KIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCT
               50        60        70        80        90       100

               40        50        60        70        80        90
pF1KE0 YRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKL
              110       120       130       140       150       160

              100       110       120       130    
pF1KE0 EDAESSNPNLQSLLSTDALPSASKGWSTSENSLNVMLESHMDCM
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EDAESSNPNLQSLLSTDALPSASKGWSTSENSLNVMLESHMDCM
              170       180       190       200    

>>CCDS12306.1 ASF1B gene_id:55723|Hs108|chr19             (202 aa)
 initn: 603 init1: 562 opt: 585  Z-score: 779.3  bits: 150.5 E(32554): 4.4e-37
Smith-Waterman score: 585; 65.7% identity (82.1% similar) in 134 aa overlap (1-134:71-202)

                                             10        20        30
pF1KE0                               MFVFQADAPNPGLIPDADAVGVTVVLITCT
                                     :::::::::::.:::..:::::::::::::
CCDS12 KIIYVGSAESEEFDQILDSVLVGPVPAGRHMFVFQADAPNPSLIPETDAVGVTVVLITCT
               50        60        70        80        90       100

               40        50        60        70        80        90
pF1KE0 YRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKL
       :.::::::::::::::: . :::::::.:::::.:::::::::::::::::::..: ..:
CCDS12 YHGQEFIRVGYYVNNEYLNPELRENPPMKPDFSQLQRNILASNPRVTRFHINWDNNMDRL
              110       120       130       140       150       160

              100       110       120       130    
pF1KE0 EDAESSNPNLQSLLSTDALPSASKGWSTSENSLNVMLESHMDCM
       :  :...:.:   :  .  :   :: .      ... :. :::.
CCDS12 EAIETQDPSLGCGLPLNCTP--IKGLGLPGCIPGLLPENSMDCI
              170       180         190       200  




134 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:24:12 2016 done: Sat Nov  5 04:24:12 2016
 Total Scan time:  1.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]