Result of FASTA (omim) for
pF1KE0793
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0793, 312 aa
1>>>pF1KE0793 312 - 312 aa - 312 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.5834+/-0.000436; mu= 1.0331+/- 0.028
mean_var=417.1822+/-86.661, 0's: 0 Z-trim(122.9): 127 B-trim: 2443 in 1/57
Lambda= 0.062793
statistics sampled from 41502 (41672) to 41502 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.489), width: 16
Scan time: 8.460
The best scores are: opt bits E(85289)
NP_001076044 (OMIM: 616999) RNA binding protein fo ( 312) 2161 209.1 9.3e-54
XP_016879699 (OMIM: 616999) PREDICTED: RNA binding ( 312) 2161 209.1 9.3e-54
XP_011522667 (OMIM: 616999) PREDICTED: RNA binding ( 326) 2161 209.2 9.5e-54
XP_011522668 (OMIM: 616999) PREDICTED: RNA binding ( 325) 2142 207.4 3.1e-53
XP_011522665 (OMIM: 616999) PREDICTED: RNA binding ( 359) 1765 173.3 6.3e-43
XP_011522661 (OMIM: 616999) PREDICTED: RNA binding ( 373) 1765 173.4 6.5e-43
XP_011522662 (OMIM: 616999) PREDICTED: RNA binding ( 373) 1765 173.4 6.5e-43
XP_016879697 (OMIM: 616999) PREDICTED: RNA binding ( 373) 1765 173.4 6.5e-43
XP_011522664 (OMIM: 616999) PREDICTED: RNA binding ( 372) 1746 171.6 2.1e-42
NP_001135805 (OMIM: 605104) RNA binding protein fo ( 370) 1641 162.1 1.6e-39
XP_016878827 (OMIM: 605104) PREDICTED: RNA binding ( 370) 1641 162.1 1.6e-39
XP_016878823 (OMIM: 605104) PREDICTED: RNA binding ( 395) 1641 162.2 1.6e-39
XP_016878818 (OMIM: 605104) PREDICTED: RNA binding ( 413) 1641 162.2 1.7e-39
XP_016878808 (OMIM: 605104) PREDICTED: RNA binding ( 569) 1641 162.4 2e-39
XP_005255451 (OMIM: 605104) PREDICTED: RNA binding ( 391) 1585 157.1 5.4e-38
XP_016878831 (OMIM: 605104) PREDICTED: RNA binding ( 347) 1527 151.8 1.9e-36
XP_016878830 (OMIM: 605104) PREDICTED: RNA binding ( 347) 1527 151.8 1.9e-36
XP_016878832 (OMIM: 605104) PREDICTED: RNA binding ( 349) 1527 151.8 1.9e-36
XP_011520850 (OMIM: 605104) PREDICTED: RNA binding ( 367) 1527 151.8 2e-36
XP_016878826 (OMIM: 605104) PREDICTED: RNA binding ( 372) 1527 151.8 2e-36
XP_016878829 (OMIM: 605104) PREDICTED: RNA binding ( 366) 1174 119.8 8.4e-27
XP_016878824 (OMIM: 605104) PREDICTED: RNA binding ( 374) 1084 111.7 2.4e-24
XP_016878825 (OMIM: 605104) PREDICTED: RNA binding ( 374) 1084 111.7 2.4e-24
XP_016878828 (OMIM: 605104) PREDICTED: RNA binding ( 376) 1084 111.7 2.4e-24
XP_011520849 (OMIM: 605104) PREDICTED: RNA binding ( 394) 1084 111.7 2.5e-24
XP_016878822 (OMIM: 605104) PREDICTED: RNA binding ( 397) 1084 111.7 2.5e-24
NP_001135806 (OMIM: 605104) RNA binding protein fo ( 397) 1084 111.7 2.5e-24
NP_061193 (OMIM: 605104) RNA binding protein fox-1 ( 397) 1084 111.7 2.5e-24
XP_016878821 (OMIM: 605104) PREDICTED: RNA binding ( 399) 1084 111.7 2.5e-24
XP_016878819 (OMIM: 605104) PREDICTED: RNA binding ( 410) 1084 111.7 2.6e-24
XP_011520848 (OMIM: 605104) PREDICTED: RNA binding ( 417) 1084 111.7 2.6e-24
XP_016878817 (OMIM: 605104) PREDICTED: RNA binding ( 417) 1084 111.7 2.6e-24
XP_016878816 (OMIM: 605104) PREDICTED: RNA binding ( 422) 1084 111.7 2.6e-24
XP_016878815 (OMIM: 605104) PREDICTED: RNA binding ( 423) 1084 111.7 2.6e-24
NP_001295046 (OMIM: 605104) RNA binding protein fo ( 425) 1084 111.7 2.6e-24
XP_016878813 (OMIM: 605104) PREDICTED: RNA binding ( 440) 1084 111.8 2.7e-24
XP_016878812 (OMIM: 605104) PREDICTED: RNA binding ( 448) 1084 111.8 2.7e-24
XP_016878811 (OMIM: 605104) PREDICTED: RNA binding ( 459) 1084 111.8 2.7e-24
NP_665899 (OMIM: 605104) RNA binding protein fox-1 ( 392) 1074 110.8 4.7e-24
NP_665900 (OMIM: 605104) RNA binding protein fox-1 ( 395) 1074 110.8 4.7e-24
XP_016878820 (OMIM: 605104) PREDICTED: RNA binding ( 404) 1074 110.8 4.8e-24
NP_665898 (OMIM: 605104) RNA binding protein fox-1 ( 418) 1074 110.8 4.9e-24
XP_005255448 (OMIM: 605104) PREDICTED: RNA binding ( 424) 1074 110.8 4.9e-24
XP_016878814 (OMIM: 605104) PREDICTED: RNA binding ( 424) 1074 110.8 4.9e-24
XP_005255447 (OMIM: 605104) PREDICTED: RNA binding ( 424) 1074 110.8 4.9e-24
XP_005255445 (OMIM: 605104) PREDICTED: RNA binding ( 426) 1074 110.8 4.9e-24
XP_005255444 (OMIM: 605104) PREDICTED: RNA binding ( 444) 1074 110.9 5e-24
XP_005255443 (OMIM: 605104) PREDICTED: RNA binding ( 449) 1074 110.9 5.1e-24
XP_016878810 (OMIM: 605104) PREDICTED: RNA binding ( 460) 1074 110.9 5.1e-24
XP_016878809 (OMIM: 605104) PREDICTED: RNA binding ( 467) 1074 110.9 5.2e-24
>>NP_001076044 (OMIM: 616999) RNA binding protein fox-1 (312 aa)
initn: 2161 init1: 2161 opt: 2161 Z-score: 1086.1 bits: 209.1 E(85289): 9.3e-54
Smith-Waterman score: 2161; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)
10 20 30 40 50 60
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT
250 260 270 280 290 300
310
pF1KE0 IGPAATYSIGTM
::::::::::::
NP_001 IGPAATYSIGTM
310
>>XP_016879699 (OMIM: 616999) PREDICTED: RNA binding pro (312 aa)
initn: 2161 init1: 2161 opt: 2161 Z-score: 1086.1 bits: 209.1 E(85289): 9.3e-54
Smith-Waterman score: 2161; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)
10 20 30 40 50 60
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT
250 260 270 280 290 300
310
pF1KE0 IGPAATYSIGTM
::::::::::::
XP_016 IGPAATYSIGTM
310
>>XP_011522667 (OMIM: 616999) PREDICTED: RNA binding pro (326 aa)
initn: 2161 init1: 2161 opt: 2161 Z-score: 1085.9 bits: 209.2 E(85289): 9.5e-54
Smith-Waterman score: 2161; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)
10 20 30 40 50 60
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT
250 260 270 280 290 300
310
pF1KE0 IGPAATYSIGTM
::::::::::::
XP_011 IGPAATYSIGTMASLCRGGYSRFTPY
310 320
>>XP_011522668 (OMIM: 616999) PREDICTED: RNA binding pro (325 aa)
initn: 1608 init1: 1608 opt: 2142 Z-score: 1076.7 bits: 207.4 E(85289): 3.1e-53
Smith-Waterman score: 2142; 99.7% identity (99.7% similar) in 312 aa overlap (1-312:1-311)
10 20 30 40 50 60
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
XP_011 EASTQPIAGTQTVP-TDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
70 80 90 100 110
130 140 150 160 170 180
pF1KE0 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE0 APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT
240 250 260 270 280 290
310
pF1KE0 IGPAATYSIGTM
::::::::::::
XP_011 IGPAATYSIGTMASLCRGGYSRFTPY
300 310 320
>>XP_011522665 (OMIM: 616999) PREDICTED: RNA binding pro (359 aa)
initn: 1765 init1: 1765 opt: 1765 Z-score: 891.6 bits: 173.3 E(85289): 6.3e-43
Smith-Waterman score: 1956; 86.3% identity (86.3% similar) in 344 aa overlap (1-297:1-344)
10 20 30 40 50 60
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
190 200 210 220 230 240
250
pF1KE0 APPPPPIPTYGA-----------------------------------------------V
:::::::::::: :
XP_011 APPPPPIPTYGAALEQTLVKMPVPWAGLAPCPLPPQQTPEPAYPTSPAFPPLSCPFASRV
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE0 VYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM
::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM
310 320 330 340 350
>>XP_011522661 (OMIM: 616999) PREDICTED: RNA binding pro (373 aa)
initn: 1765 init1: 1765 opt: 1765 Z-score: 891.4 bits: 173.4 E(85289): 6.5e-43
Smith-Waterman score: 1956; 86.3% identity (86.3% similar) in 344 aa overlap (1-297:1-344)
10 20 30 40 50 60
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
190 200 210 220 230 240
250
pF1KE0 APPPPPIPTYGA-----------------------------------------------V
:::::::::::: :
XP_011 APPPPPIPTYGAALEQTLVKMPVPWAGLAPCPLPPQQTPEPAYPTSPAFPPLSCPFASRV
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE0 VYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM
::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTMA
310 320 330 340 350 360
XP_011 SLCRGGYSRFTPY
370
>>XP_011522662 (OMIM: 616999) PREDICTED: RNA binding pro (373 aa)
initn: 1765 init1: 1765 opt: 1765 Z-score: 891.4 bits: 173.4 E(85289): 6.5e-43
Smith-Waterman score: 1956; 86.3% identity (86.3% similar) in 344 aa overlap (1-297:1-344)
10 20 30 40 50 60
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
190 200 210 220 230 240
250
pF1KE0 APPPPPIPTYGA-----------------------------------------------V
:::::::::::: :
XP_011 APPPPPIPTYGAALEQTLVKMPVPWAGLAPCPLPPQQTPEPAYPTSPAFPPLSCPFASRV
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE0 VYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM
::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTMA
310 320 330 340 350 360
XP_011 SLCRGGYSRFTPY
370
>>XP_016879697 (OMIM: 616999) PREDICTED: RNA binding pro (373 aa)
initn: 1765 init1: 1765 opt: 1765 Z-score: 891.4 bits: 173.4 E(85289): 6.5e-43
Smith-Waterman score: 1956; 86.3% identity (86.3% similar) in 344 aa overlap (1-297:1-344)
10 20 30 40 50 60
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
190 200 210 220 230 240
250
pF1KE0 APPPPPIPTYGA-----------------------------------------------V
:::::::::::: :
XP_016 APPPPPIPTYGAALEQTLVKMPVPWAGLAPCPLPPQQTPEPAYPTSPAFPPLSCPFASRV
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE0 VYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM
::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTMA
310 320 330 340 350 360
XP_016 SLCRGGYSRFTPY
370
>>XP_011522664 (OMIM: 616999) PREDICTED: RNA binding pro (372 aa)
initn: 1212 init1: 1212 opt: 1746 Z-score: 882.1 bits: 171.6 E(85289): 2.1e-42
Smith-Waterman score: 1937; 86.0% identity (86.0% similar) in 344 aa overlap (1-297:1-343)
10 20 30 40 50 60
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
XP_011 EASTQPIAGTQTVP-TDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
70 80 90 100 110
130 140 150 160 170 180
pF1KE0 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
180 190 200 210 220 230
250
pF1KE0 APPPPPIPTYGA-----------------------------------------------V
:::::::::::: :
XP_011 APPPPPIPTYGAALEQTLVKMPVPWAGLAPCPLPPQQTPEPAYPTSPAFPPLSCPFASRV
240 250 260 270 280 290
260 270 280 290 300 310
pF1KE0 VYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM
::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTMA
300 310 320 330 340 350
XP_011 SLCRGGYSRFTPY
360 370
>>NP_001135805 (OMIM: 605104) RNA binding protein fox-1 (370 aa)
initn: 1566 init1: 1334 opt: 1641 Z-score: 830.8 bits: 162.1 E(85289): 1.6e-39
Smith-Waterman score: 1641; 78.1% identity (90.5% similar) in 315 aa overlap (1-312:21-330)
10 20 30 40
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVP
::::: ::. :: ::::::::. : :::. .:.::: ::
NP_001 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP
10 20 30 40 50
50 60 70 80 90
pF1KE0 TEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQP
:: ..:: ::::: :: ...:.: ..:: : :::.:: ::.:: .::. :: :.::
NP_001 -EHTLNLYPPAQTHSEQSPADTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQP
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE0 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKL
::::::::::::::::::::::::::::::::::::::::::::::::.:.:::::::::
NP_001 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE0 NGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGT
.::.::::::::::::::::::::: :::::::::::::::::.:::::: :::::.. .
NP_001 HGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAVPGFPYPAATA
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE0 AVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPA-
:.::::::::::::.:::::::: ::::::.::.::::::::::.:::::::::::::.
NP_001 AAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAAYRYAQPTP
240 250 260 270 280 290
280 290 300 310
pF1KE0 AAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM
:.:::::::::::::: :::::...:: ::..:.:
NP_001 ATAAAYSDSYGRVYAA-DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSL
300 310 320 330 340 350
NP_001 QASIYRGGYNRFAPY
360 370
312 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 03:11:21 2016 done: Sat Nov 5 03:11:22 2016
Total Scan time: 8.460 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]