Result of FASTA (ccds) for
pF1KE0793
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0793, 312 aa
1>>>pF1KE0793 312 - 312 aa - 312 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.9069+/-0.00109; mu= -1.6904+/- 0.067
mean_var=362.5212+/-72.847, 0's: 0 Z-trim(114.9): 44 B-trim: 993 in 1/51
Lambda= 0.067361
statistics sampled from 15422 (15465) to 15422 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.475), width: 16
Scan time: 2.710
The best scores are: opt bits E(32554)
CCDS45805.1 RBFOX3 gene_id:146713|Hs108|chr17 ( 312) 2161 223.1 2.2e-58
CCDS55984.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 370) 1641 172.7 3.9e-43
CCDS55983.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 397) 1084 118.6 8.2e-27
CCDS76818.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 425) 1084 118.6 8.5e-27
CCDS45405.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 392) 1074 117.6 1.6e-26
CCDS10532.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 395) 1074 117.6 1.6e-26
CCDS10531.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 418) 1074 117.6 1.7e-26
CCDS43013.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 451) 979 108.4 1e-23
CCDS46700.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 380) 970 107.5 1.7e-23
CCDS13921.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 367) 966 107.1 2.2e-23
CCDS46701.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 376) 965 107.0 2.4e-23
CCDS46699.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 370) 962 106.7 2.9e-23
>>CCDS45805.1 RBFOX3 gene_id:146713|Hs108|chr17 (312 aa)
initn: 2161 init1: 2161 opt: 2161 Z-score: 1161.8 bits: 223.1 E(32554): 2.2e-58
Smith-Waterman score: 2161; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)
10 20 30 40 50 60
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT
250 260 270 280 290 300
310
pF1KE0 IGPAATYSIGTM
::::::::::::
CCDS45 IGPAATYSIGTM
310
>>CCDS55984.1 RBFOX1 gene_id:54715|Hs108|chr16 (370 aa)
initn: 1566 init1: 1334 opt: 1641 Z-score: 887.8 bits: 172.7 E(32554): 3.9e-43
Smith-Waterman score: 1641; 78.1% identity (90.5% similar) in 315 aa overlap (1-312:21-330)
10 20 30 40
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVP
::::: ::. :: ::::::::. : :::. .:.::: ::
CCDS55 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP
10 20 30 40 50
50 60 70 80 90
pF1KE0 TEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQP
:: ..:: ::::: :: ...:.: ..:: : :::.:: ::.:: .::. :: :.::
CCDS55 -EHTLNLYPPAQTHSEQSPADTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQP
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE0 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKL
::::::::::::::::::::::::::::::::::::::::::::::::.:.:::::::::
CCDS55 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE0 NGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGT
.::.::::::::::::::::::::: :::::::::::::::::.:::::: :::::.. .
CCDS55 HGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAVPGFPYPAATA
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE0 AVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPA-
:.::::::::::::.:::::::: ::::::.::.::::::::::.:::::::::::::.
CCDS55 AAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAAYRYAQPTP
240 250 260 270 280 290
280 290 300 310
pF1KE0 AAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM
:.:::::::::::::: :::::...:: ::..:.:
CCDS55 ATAAAYSDSYGRVYAA-DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSL
300 310 320 330 340 350
CCDS55 QASIYRGGYNRFAPY
360 370
>>CCDS55983.1 RBFOX1 gene_id:54715|Hs108|chr16 (397 aa)
initn: 1572 init1: 815 opt: 1084 Z-score: 594.9 bits: 118.6 E(32554): 8.2e-27
Smith-Waterman score: 1574; 71.9% identity (83.3% similar) in 342 aa overlap (1-312:21-357)
10 20 30 40
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVP
::::: ::. :: ::::::::. : :::. .:.::: ::
CCDS55 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP
10 20 30 40 50
50 60 70 80 90
pF1KE0 TEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQP
:: ..:: ::::: :: ...:.: ..:: : :::.:: ::.:: .::. :: :.::
CCDS55 -EHTLNLYPPAQTHSEQSPADTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQP
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE0 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKL
::::::::::::::::::::::::::::::::::::::::::::::::.:.:::::::::
CCDS55 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL
120 130 140 150 160 170
160 170 180 190 200
pF1KE0 NGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAVT---------
.::.::::::::::::::::::::: :::::::::::::::::.::::: :
CCDS55 HGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQE
180 190 200 210 220 230
210 220 230 240 250
pF1KE0 ------------------GFPYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYG
:::::.. .:.::::::::::::.:::::::: ::::::.::
CCDS55 GSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYG
240 250 260 270 280 290
260 270 280 290 300 310
pF1KE0 AVVYQDGFYGAEIYGGYAAYRYAQPA-AAAAAYSDSYGRVYAAADPYHHTIGPAATYSIG
.::::::::::.:::::::::::::. :.:::::::::::::: :::::...:: ::..:
CCDS55 GVVYQDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAA-DPYHHALAPAPTYGVG
300 310 320 330 340 350
pF1KE0 TM
.:
CCDS55 AMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
360 370 380 390
>>CCDS76818.1 RBFOX1 gene_id:54715|Hs108|chr16 (425 aa)
initn: 1572 init1: 815 opt: 1084 Z-score: 594.5 bits: 118.6 E(32554): 8.5e-27
Smith-Waterman score: 1574; 71.9% identity (83.3% similar) in 342 aa overlap (1-312:64-400)
10 20 30
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPT
::::: ::. :: ::::::::. : :::.
CCDS76 IEDRKVSRQQMNCEREQLRGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPA
40 50 60 70 80 90
40 50 60 70 80
pF1KE0 QDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP-LHP
.:.::: :: :: ..:: ::::: :: ...:.: ..:: : :::.:: ::.:: .:
CCDS76 PEYTGQTTVP-EHTLNLYPPAQTHSEQSPADTSAQTVSGTAT--QTDDAAPTDGQPQTQP
100 110 120 130 140
90 100 110 120 130 140
pF1KE0 SDPTE-KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETS
:. :: :.::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS76 SENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS
150 160 170 180 190 200
150 160 170 180 190 200
pF1KE0 SDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAV
.:::::::::.::.::::::::::::::::::::: :::::::::::::::::.:::::
CCDS76 ADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAG
210 220 230 240 250 260
210 220 230 240
pF1KE0 T---------------------------GFPYPTTGTAVAYRGAHLRGRGRAVYNTFRAA
: :::::.. .:.::::::::::::.::::::::
CCDS76 TVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAA
270 280 290 300 310 320
250 260 270 280 290 300
pF1KE0 PPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPA-AAAAAYSDSYGRVYAAADPYHHT
::::::.::.::::::::::.:::::::::::::. :.:::::::::::::: :::::.
CCDS76 APPPPIPAYGGVVYQDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAA-DPYHHA
330 340 350 360 370 380
310
pF1KE0 IGPAATYSIGTM
..:: ::..:.:
CCDS76 LAPAPTYGVGAMPQGSSPSTDFRGAKLHTSRPLLSGS
390 400 410 420
>>CCDS45405.1 RBFOX1 gene_id:54715|Hs108|chr16 (392 aa)
initn: 1531 init1: 815 opt: 1074 Z-score: 589.7 bits: 117.6 E(32554): 1.6e-26
Smith-Waterman score: 1518; 70.0% identity (81.9% similar) in 343 aa overlap (1-312:41-378)
10 20 30
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPT
::::: ::. :: ::::::::. : :::.
CCDS45 PYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPA
20 30 40 50 60
40 50 60 70 80
pF1KE0 QDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP-LHP
.:.::: :: :: ..:: ::::: :: ...:.: ..:: : :::.:: ::.:: .:
CCDS45 PEYTGQTTVP-EHTLNLYPPAQTHSEQSPADTSAQTVSGTAT--QTDDAAPTDGQPQTQP
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE0 SDPTE-KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETS
:. :: :.::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS45 SENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE0 SDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAV
.:::::::::.::.::::::::::::::::::::: :::::::::::::::::.:::::
CCDS45 ADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAG
190 200 210 220 230 240
210 220 230 240
pF1KE0 T---------------------------GFPYPTTGTAVAYRGAHLRGRGRAVYNTFRAA
: :::::.. .:.::::::::::::.::::::::
CCDS45 TVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAA
250 260 270 280 290 300
250 260 270 280 290
pF1KE0 PPPPPIPTYGAVVYQDGFYGAEIY-GGYAAYRYAQPA-AAAAAYSDSYGRVYAAADPYHH
::::::.::.::::. :: .. :::::::::::. :.:::::::::::::: :::::
CCDS45 APPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA-DPYHH
310 320 330 340 350 360
300 310
pF1KE0 TIGPAATYSIGTM
...:: ::..:.:
CCDS45 ALAPAPTYGVGAMASIYRGGYNRFAPY
370 380 390
>>CCDS10532.1 RBFOX1 gene_id:54715|Hs108|chr16 (395 aa)
initn: 1290 init1: 815 opt: 1074 Z-score: 589.7 bits: 117.6 E(32554): 1.6e-26
Smith-Waterman score: 1404; 69.0% identity (80.4% similar) in 326 aa overlap (1-295:41-362)
10 20 30
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPT
::::: ::. :: ::::::::. : :::.
CCDS10 PYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPA
20 30 40 50 60
40 50 60 70 80
pF1KE0 QDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP-LHP
.:.::: :: :: ..:: ::::: :: ...:.: ..:: : :::.:: ::.:: .:
CCDS10 PEYTGQTTVP-EHTLNLYPPAQTHSEQSPADTSAQTVSGTAT--QTDDAAPTDGQPQTQP
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE0 SDPTE-KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETS
:. :: :.::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS10 SENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE0 SDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAV
.:::::::::.::.::::::::::::::::::::: :::::::::::::::::.:::::
CCDS10 ADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAG
190 200 210 220 230 240
210 220 230 240
pF1KE0 T---------------------------GFPYPTTGTAVAYRGAHLRGRGRAVYNTFRAA
: :::::.. .:.::::::::::::.::::::::
CCDS10 TVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAA
250 260 270 280 290 300
250 260 270 280 290
pF1KE0 PPPPPIPTYGAVVYQDGFYGAEIY-GGYAAYRYAQPA-AAAAAYSDSYGRVYAAADPYHH
::::::.::.::::. :: .. :::::::::::. :.:::::: :..:::
CCDS10 APPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVAADEISC
310 320 330 340 350 360
300 310
pF1KE0 TIGPAATYSIGTM
CCDS10 NTSAVTDEFMLPTPTTTHLLQPPPTALVP
370 380 390
>>CCDS10531.1 RBFOX1 gene_id:54715|Hs108|chr16 (418 aa)
initn: 1531 init1: 815 opt: 1074 Z-score: 589.4 bits: 117.6 E(32554): 1.7e-26
Smith-Waterman score: 1518; 70.0% identity (81.9% similar) in 343 aa overlap (1-312:41-378)
10 20 30
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPT
::::: ::. :: ::::::::. : :::.
CCDS10 PYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPA
20 30 40 50 60
40 50 60 70 80
pF1KE0 QDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP-LHP
.:.::: :: :: ..:: ::::: :: ...:.: ..:: : :::.:: ::.:: .:
CCDS10 PEYTGQTTVP-EHTLNLYPPAQTHSEQSPADTSAQTVSGTAT--QTDDAAPTDGQPQTQP
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE0 SDPTE-KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETS
:. :: :.::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS10 SENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE0 SDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAV
.:::::::::.::.::::::::::::::::::::: :::::::::::::::::.:::::
CCDS10 ADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAG
190 200 210 220 230 240
210 220 230 240
pF1KE0 T---------------------------GFPYPTTGTAVAYRGAHLRGRGRAVYNTFRAA
: :::::.. .:.::::::::::::.::::::::
CCDS10 TVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAA
250 260 270 280 290 300
250 260 270 280 290
pF1KE0 PPPPPIPTYGAVVYQDGFYGAEIY-GGYAAYRYAQPA-AAAAAYSDSYGRVYAAADPYHH
::::::.::.::::. :: .. :::::::::::. :.:::::::::::::: :::::
CCDS10 APPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA-DPYHH
310 320 330 340 350 360
300 310
pF1KE0 TIGPAATYSIGTM
...:: ::..:.:
CCDS10 ALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
370 380 390 400 410
>>CCDS43013.1 RBFOX2 gene_id:23543|Hs108|chr22 (451 aa)
initn: 1050 init1: 699 opt: 979 Z-score: 539.1 bits: 108.4 E(32554): 1e-23
Smith-Waterman score: 1266; 62.7% identity (74.9% similar) in 346 aa overlap (1-298:91-424)
10 20 30
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPT
:.::. .:::::::::.::. : : :
CCDS43 MQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVP--H-T
70 80 90 100 110
40 50 60 70 80
pF1KE0 QDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP--LH
:::.::: ::..::: .:.: :: .. ::: :. : ::. .::::.: .
CCDS43 QDYAGQTG---EHNLTLYGSTQAHGEQSSNSPSTQ--NGSLT--QTEGGAQTDGQQSQTQ
120 130 140 150 160 170
90 100 110 120 130 140
pF1KE0 PSDPTE-KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFET
:. .: :. :::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS43 SSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFEN
180 190 200 210 220 230
150 160 170 180 190 200
pF1KE0 SSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYA
:.:::::::::.::.:::::::::::::::::::: .::.:::::.::::::::::.::
CCDS43 SADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYA
240 250 260 270 280 290
210 220 230
pF1KE0 -----------------------------------VTGFPYPTTGT-AVAYRGAHLRGRG
: ::::::..: :.:.:::::::::
CCDS43 ASSFQADVSLGNDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRG
300 310 320 330 340 350
240 250 260 270 280
pF1KE0 RAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPA---------AAAAA
:.::.. ::.:: ::.: .::::::::::..::::::::::::: :::::
CCDS43 RTVYGAVRAVPPTA-IPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAA
360 370 380 390 400
290 300 310
pF1KE0 YSDSYGRVYAAADPYHHTIGPAATYSIGTM
:::.:::::.: ::::
CCDS43 YSDGYGRVYTA-DPYHALAPAASYGVGAVASLYRGGYSRFAPY
410 420 430 440 450
>>CCDS46700.1 RBFOX2 gene_id:23543|Hs108|chr22 (380 aa)
initn: 1068 init1: 699 opt: 970 Z-score: 535.2 bits: 107.5 E(32554): 1.7e-23
Smith-Waterman score: 1257; 62.4% identity (74.6% similar) in 346 aa overlap (1-298:21-353)
10 20 30 40
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVP
:.::. .:::::::::.::. : : ::::.:::
CCDS46 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVP--H-TQDYAGQT---
10 20 30 40 50
50 60 70 80 90
pF1KE0 TEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP--LHPSDPTE-KQQ
::..::: .:.: :: .. ::: :. : :. .::::.: . :. .: :.
CCDS46 GEHNLTLYGSTQAHGEQSSNSPSTQ--NGSLT---TEGGAQTDGQQSQTQSSENSESKST
60 70 80 90 100
100 110 120 130 140 150
pF1KE0 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREK
:::::::::::::::::::::::::::::::::::::::::::::::::.:.::::::::
CCDS46 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK
110 120 130 140 150 160
160 170 180 190 200
pF1KE0 LNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYA----------
:.::.:::::::::::::::::::: .::.:::::.::::::::::.::
CCDS46 LHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSL
170 180 190 200 210 220
210 220 230 240
pF1KE0 -------------------------VTGFPYPTTGT-AVAYRGAHLRGRGRAVYNTFRAA
: ::::::..: :.:.::::::::::.::.. ::.
CCDS46 GNDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAV
230 240 250 260 270 280
250 260 270 280 290
pF1KE0 PPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPA---------AAAAAYSDSYGRVYA
:: ::.: .::::::::::..::::::::::::: ::::::::.:::::.
CCDS46 PPTA-IPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYT
290 300 310 320 330 340
300 310
pF1KE0 AADPYHHTIGPAATYSIGTM
: ::::
CCDS46 A-DPYHALAPAASYGVGAVASLYRGGYSRFAPY
350 360 370 380
>>CCDS13921.1 RBFOX2 gene_id:23543|Hs108|chr22 (367 aa)
initn: 820 init1: 699 opt: 966 Z-score: 533.3 bits: 107.1 E(32554): 2.2e-23
Smith-Waterman score: 1032; 60.8% identity (74.6% similar) in 291 aa overlap (1-256:21-300)
10 20 30 40
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVP
:.::. .:::::::::.::. :: ::::.:::
CCDS13 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGV--PH-TQDYAGQT---
10 20 30 40 50
50 60 70 80 90
pF1KE0 TEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP--LHPSDPTE-KQQ
::..::: .:.: :: .. ::: :. : ::. .::::.: . :. .: :.
CCDS13 GEHNLTLYGSTQAHGEQSSNSPSTQ--NGSLT--QTEGGAQTDGQQSQTQSSENSESKST
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE0 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREK
:::::::::::::::::::::::::::::::::::::::::::::::::.:.::::::::
CCDS13 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK
120 130 140 150 160 170
160 170 180 190 200
pF1KE0 LNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYA----------
:.::.:::::::::::::::::::: .::.:::::.::::::::::.::
CCDS13 LHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSL
180 190 200 210 220 230
210 220 230 240
pF1KE0 ---------------------VTGFPYPTTGT-AVAYRGAHLRGRGRAVYNTFRAAPPPP
. ::::::..: :.:.::::::::::.::.. ::.::
CCDS13 GNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTA
240 250 260 270 280 290
250 260 270 280 290 300
pF1KE0 PIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHTIGPAA
::.: .: .:
CCDS13 -IPAYPGVDMQPTDMHSLLLQPQPPLLQPLQPLTVTVMAGCTQPTPTMPLPLPLAMELAL
300 310 320 330 340
312 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 03:11:20 2016 done: Sat Nov 5 03:11:21 2016
Total Scan time: 2.710 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]