Result of FASTA (omim) for
pF1KE0785
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0785, 353 aa
1>>>pF1KE0785 353 - 353 aa - 353 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1799+/-0.00028; mu= 19.8412+/- 0.018
mean_var=113.0435+/-23.906, 0's: 0 Z-trim(120.9): 215 B-trim: 1849 in 1/52
Lambda= 0.120629
statistics sampled from 36563 (36840) to 36563 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.432), width: 16
Scan time: 9.000
The best scores are: opt bits E(85289)
NP_919225 (OMIM: 609385) dead end protein homolog ( 353) 2429 433.0 5e-121
NP_001095867 (OMIM: 607201) heterogeneous nuclear ( 532) 469 92.1 3.1e-18
NP_005817 (OMIM: 607201) heterogeneous nuclear rib ( 633) 469 92.2 3.4e-18
XP_005245768 (OMIM: 607201) PREDICTED: heterogeneo ( 633) 469 92.2 3.4e-18
XP_016865669 (OMIM: 616686) PREDICTED: heterogeneo ( 463) 463 91.0 5.8e-18
NP_001153145 (OMIM: 616686) heterogeneous nuclear ( 464) 463 91.0 5.8e-18
XP_005248693 (OMIM: 616686) PREDICTED: heterogeneo ( 525) 463 91.0 6.3e-18
XP_016865668 (OMIM: 616686) PREDICTED: heterogeneo ( 561) 463 91.1 6.6e-18
NP_001153148 (OMIM: 616686) heterogeneous nuclear ( 561) 463 91.1 6.6e-18
XP_005248692 (OMIM: 616686) PREDICTED: heterogeneo ( 561) 463 91.1 6.6e-18
NP_001153149 (OMIM: 616686) heterogeneous nuclear ( 562) 463 91.1 6.6e-18
XP_016865667 (OMIM: 616686) PREDICTED: heterogeneo ( 562) 463 91.1 6.6e-18
XP_016865666 (OMIM: 616686) PREDICTED: heterogeneo ( 604) 463 91.1 6.9e-18
XP_016865665 (OMIM: 616686) PREDICTED: heterogeneo ( 605) 463 91.1 6.9e-18
XP_005248694 (OMIM: 616686) PREDICTED: heterogeneo ( 623) 463 91.1 7e-18
NP_006363 (OMIM: 616686) heterogeneous nuclear rib ( 623) 463 91.1 7e-18
NP_001095869 (OMIM: 607201) heterogeneous nuclear ( 535) 457 90.0 1.3e-17
NP_001095868 (OMIM: 607201) heterogeneous nuclear ( 636) 457 90.1 1.5e-17
XP_011538773 (OMIM: 607201) PREDICTED: heterogeneo ( 636) 457 90.1 1.5e-17
NP_001153146 (OMIM: 616686) heterogeneous nuclear ( 527) 426 84.6 5.5e-16
NP_001153147 (OMIM: 616686) heterogeneous nuclear ( 588) 426 84.6 5.9e-16
NP_001284551 (OMIM: 607201) heterogeneous nuclear ( 494) 358 72.7 1.9e-12
NP_001284549 (OMIM: 607201) heterogeneous nuclear ( 595) 358 72.8 2.2e-12
XP_016855497 (OMIM: 607201) PREDICTED: heterogeneo ( 595) 358 72.8 2.2e-12
XP_011538778 (OMIM: 607201) PREDICTED: heterogeneo ( 497) 346 70.6 8.2e-12
XP_011538777 (OMIM: 607201) PREDICTED: heterogeneo ( 598) 346 70.7 9.2e-12
XP_011538776 (OMIM: 607201) PREDICTED: heterogeneo ( 598) 346 70.7 9.2e-12
NP_001240700 (OMIM: 616686) heterogeneous nuclear ( 410) 341 69.7 1.3e-11
XP_016876139 (OMIM: 612408) PREDICTED: paraspeckle ( 393) 176 40.9 0.0057
XP_011533444 (OMIM: 612408) PREDICTED: paraspeckle ( 406) 176 40.9 0.0058
XP_011533443 (OMIM: 612408) PREDICTED: paraspeckle ( 409) 176 40.9 0.0058
XP_011533442 (OMIM: 612408) PREDICTED: paraspeckle ( 417) 176 40.9 0.0059
XP_011533441 (OMIM: 612408) PREDICTED: paraspeckle ( 417) 176 40.9 0.0059
XP_011533440 (OMIM: 612408) PREDICTED: paraspeckle ( 447) 176 41.0 0.0062
XP_011533439 (OMIM: 612408) PREDICTED: paraspeckle ( 469) 176 41.0 0.0064
XP_006719907 (OMIM: 612408) PREDICTED: paraspeckle ( 523) 176 41.1 0.0068
NP_001035879 (OMIM: 612408) paraspeckle component ( 523) 176 41.1 0.0068
>>NP_919225 (OMIM: 609385) dead end protein homolog 1 [H (353 aa)
initn: 2429 init1: 2429 opt: 2429 Z-score: 2293.9 bits: 433.0 E(85289): 5e-121
Smith-Waterman score: 2429; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353)
10 20 30 40 50 60
pF1KE0 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 FIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 HPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 HPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRSPQPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRSPQPEG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 SQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQVVIPGHPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 SQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQVVIPGHPVP
250 260 270 280 290 300
310 320 330 340 350
pF1KE0 FSGLIWVVLTLDGRDGHEVAKDAVSVRLLQALSESGANLLWSAGAEAGTMVKQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 FSGLIWVVLTLDGRDGHEVAKDAVSVRLLQALSESGANLLWSAGAEAGTMVKQ
310 320 330 340 350
>>NP_001095867 (OMIM: 607201) heterogeneous nuclear ribo (532 aa)
initn: 294 init1: 168 opt: 469 Z-score: 448.4 bits: 92.1 E(85289): 3.1e-18
Smith-Waterman score: 469; 35.4% identity (67.9% similar) in 212 aa overlap (12-218:16-227)
10 20 30 40 50
pF1KE0 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPP
: .. ..: ..: ...:: : ..:::::::::: : : :
NP_001 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 PAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQA
:.:::.:..:.:.:: .:.:::...: ....:::: .:: :::.:. . ....::
NP_001 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPS
:. .. .::. : :: :. . .: : ..: : :. .: .. . :: .. : .
NP_001 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 PGPAPGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGP
: . . .:.. .:..::.:.. :. :. .. :. :.::: :
NP_001 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 FLRSPQPEGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQ
NP_001 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG
250 260 270 280 290 300
>>NP_005817 (OMIM: 607201) heterogeneous nuclear ribonuc (633 aa)
initn: 294 init1: 168 opt: 469 Z-score: 447.6 bits: 92.2 E(85289): 3.4e-18
Smith-Waterman score: 469; 35.4% identity (67.9% similar) in 212 aa overlap (12-218:117-328)
10 20 30 40
pF1KE0 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRK
: .. ..: ..: ...:: : ..::::
NP_005 DLSHVQNKSAFLCGVMKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRK
90 100 110 120 130 140
50 60 70 80 90
pF1KE0 YGGPPPGWV--GSPPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNR
:::::: : : : :.:::.:..:.:.:: .:.:::...: ....:::: .:: ::
NP_005 YGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNR
150 160 170 180 190 200
100 110 120 130 140 150
pF1KE0 GFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLAL
:.:. . ....:: :. .. .::. : :: :. . .: : ..: : :. .: .
NP_005 GYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEF
210 220 230 240 250 260
160 170 180 190 200 210
pF1KE0 QPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWL
. . :: .. : .: . . .:.. .:..::.:.. :. :. .. :. :.:::
NP_005 SKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWA
270 280 290 300 310 320
220 230 240 250 260 270
pF1KE0 KPDLKQRLRQQLVGPFLRSPQPEGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTK
:
NP_005 DPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGA
330 340 350 360 370 380
>>XP_005245768 (OMIM: 607201) PREDICTED: heterogeneous n (633 aa)
initn: 294 init1: 168 opt: 469 Z-score: 447.6 bits: 92.2 E(85289): 3.4e-18
Smith-Waterman score: 469; 35.4% identity (67.9% similar) in 212 aa overlap (12-218:117-328)
10 20 30 40
pF1KE0 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRK
: .. ..: ..: ...:: : ..::::
XP_005 DLSHVQNKSAFLCGVMKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRK
90 100 110 120 130 140
50 60 70 80 90
pF1KE0 YGGPPPGWV--GSPPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNR
:::::: : : : :.:::.:..:.:.:: .:.:::...: ....:::: .:: ::
XP_005 YGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNR
150 160 170 180 190 200
100 110 120 130 140 150
pF1KE0 GFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLAL
:.:. . ....:: :. .. .::. : :: :. . .: : ..: : :. .: .
XP_005 GYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEF
210 220 230 240 250 260
160 170 180 190 200 210
pF1KE0 QPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWL
. . :: .. : .: . . .:.. .:..::.:.. :. :. .. :. :.:::
XP_005 SKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWA
270 280 290 300 310 320
220 230 240 250 260 270
pF1KE0 KPDLKQRLRQQLVGPFLRSPQPEGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTK
:
XP_005 DPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGA
330 340 350 360 370 380
>>XP_016865669 (OMIM: 616686) PREDICTED: heterogeneous n (463 aa)
initn: 303 init1: 167 opt: 463 Z-score: 443.5 bits: 91.0 E(85289): 5.8e-18
Smith-Waterman score: 463; 33.0% identity (67.0% similar) in 227 aa overlap (1-218:1-227)
10 20 30 40 50
pF1KE0 MQSKRDCELWCERVNPENK----AALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPP
:.. :. : .: .: : ..: ...:: : ..:::::::::: : :. :
XP_016 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 PAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQA
.:.:.:.:..:.:..: .:.:::...: ....:::: ..:::::.:.. . ....::
XP_016 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPS
:. .:: .: . . :: :. . .: : ..: . :. .: .. . :: .. : .
XP_016 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 PGPAPGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGP
: . . .:.. .:..::.:.. :. :. .. :. .::: :
XP_016 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 FLRSPQPEGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQ
XP_016 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
250 260 270 280 290 300
>>NP_001153145 (OMIM: 616686) heterogeneous nuclear ribo (464 aa)
initn: 303 init1: 167 opt: 463 Z-score: 443.4 bits: 91.0 E(85289): 5.8e-18
Smith-Waterman score: 463; 33.0% identity (67.0% similar) in 227 aa overlap (1-218:1-227)
10 20 30 40 50
pF1KE0 MQSKRDCELWCERVNPENK----AALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPP
:.. :. : .: .: : ..: ...:: : ..:::::::::: : :. :
NP_001 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 PAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQA
.:.:.:.:..:.:..: .:.:::...: ....:::: ..:::::.:.. . ....::
NP_001 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPS
:. .:: .: . . :: :. . .: : ..: . :. .: .. . :: .. : .
NP_001 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 PGPAPGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGP
: . . .:.. .:..::.:.. :. :. .. :. .::: :
NP_001 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 FLRSPQPEGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQ
NP_001 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
250 260 270 280 290 300
>>XP_005248693 (OMIM: 616686) PREDICTED: heterogeneous n (525 aa)
initn: 303 init1: 167 opt: 463 Z-score: 442.8 bits: 91.0 E(85289): 6.3e-18
Smith-Waterman score: 463; 33.0% identity (67.0% similar) in 227 aa overlap (1-218:1-227)
10 20 30 40 50
pF1KE0 MQSKRDCELWCERVNPENK----AALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPP
:.. :. : .: .: : ..: ...:: : ..:::::::::: : :. :
XP_005 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 PAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQA
.:.:.:.:..:.:..: .:.:::...: ....:::: ..:::::.:.. . ....::
XP_005 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPS
:. .:: .: . . :: :. . .: : ..: . :. .: .. . :: .. : .
XP_005 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 PGPAPGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGP
: . . .:.. .:..::.:.. :. :. .. :. .::: :
XP_005 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 FLRSPQPEGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQ
XP_005 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
250 260 270 280 290 300
>>XP_016865668 (OMIM: 616686) PREDICTED: heterogeneous n (561 aa)
initn: 303 init1: 167 opt: 463 Z-score: 442.5 bits: 91.1 E(85289): 6.6e-18
Smith-Waterman score: 463; 33.0% identity (67.0% similar) in 227 aa overlap (1-218:99-325)
10 20
pF1KE0 MQSKRDCELWCERVNPENK----AALEAWV
:.. :. : .: .: : ..: .
XP_016 NEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKIKALL
70 80 90 100 110 120
30 40 50 60 70 80
pF1KE0 RETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRL
..:: : ..:::::::::: : :. : .:.:.:.:..:.:..: .:.:::...: .
XP_016 ERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPI
130 140 150 160 170 180
90 100 110 120 130 140
pF1KE0 YEFRLMMT-FSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRSTEKCELSVD
...:::: ..:::::.:.. . ....:: :. .:: .: . . :: :. . .: :
XP_016 WDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVG
190 200 210 220 230 240
150 160 170 180 190 200
pF1KE0 GLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAAAMAKKALVE
..: . :. .: .. . :: .. : .: . . .:.. .:..::.:.. :.
XP_016 SIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMS
250 260 270 280 290 300
210 220 230 240 250 260
pF1KE0 GQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRSPQPEGSQLALARDKLGFQGARATLQL
:. .. :. .::: :
XP_016 GKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVK
310 320 330 340 350 360
>>NP_001153148 (OMIM: 616686) heterogeneous nuclear ribo (561 aa)
initn: 303 init1: 167 opt: 463 Z-score: 442.5 bits: 91.1 E(85289): 6.6e-18
Smith-Waterman score: 463; 33.0% identity (67.0% similar) in 227 aa overlap (1-218:99-325)
10 20
pF1KE0 MQSKRDCELWCERVNPENK----AALEAWV
:.. :. : .: .: : ..: .
NP_001 NEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKIKALL
70 80 90 100 110 120
30 40 50 60 70 80
pF1KE0 RETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRL
..:: : ..:::::::::: : :. : .:.:.:.:..:.:..: .:.:::...: .
NP_001 ERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPI
130 140 150 160 170 180
90 100 110 120 130 140
pF1KE0 YEFRLMMT-FSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRSTEKCELSVD
...:::: ..:::::.:.. . ....:: :. .:: .: . . :: :. . .: :
NP_001 WDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVG
190 200 210 220 230 240
150 160 170 180 190 200
pF1KE0 GLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAAAMAKKALVE
..: . :. .: .. . :: .. : .: . . .:.. .:..::.:.. :.
NP_001 SIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMS
250 260 270 280 290 300
210 220 230 240 250 260
pF1KE0 GQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRSPQPEGSQLALARDKLGFQGARATLQL
:. .. :. .::: :
NP_001 GKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVK
310 320 330 340 350 360
>>XP_005248692 (OMIM: 616686) PREDICTED: heterogeneous n (561 aa)
initn: 303 init1: 167 opt: 463 Z-score: 442.5 bits: 91.1 E(85289): 6.6e-18
Smith-Waterman score: 463; 33.0% identity (67.0% similar) in 227 aa overlap (1-218:99-325)
10 20
pF1KE0 MQSKRDCELWCERVNPENK----AALEAWV
:.. :. : .: .: : ..: .
XP_005 NEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKIKALL
70 80 90 100 110 120
30 40 50 60 70 80
pF1KE0 RETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRL
..:: : ..:::::::::: : :. : .:.:.:.:..:.:..: .:.:::...: .
XP_005 ERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPI
130 140 150 160 170 180
90 100 110 120 130 140
pF1KE0 YEFRLMMT-FSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRSTEKCELSVD
...:::: ..:::::.:.. . ....:: :. .:: .: . . :: :. . .: :
XP_005 WDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVG
190 200 210 220 230 240
150 160 170 180 190 200
pF1KE0 GLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAAAMAKKALVE
..: . :. .: .. . :: .. : .: . . .:.. .:..::.:.. :.
XP_005 SIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMS
250 260 270 280 290 300
210 220 230 240 250 260
pF1KE0 GQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRSPQPEGSQLALARDKLGFQGARATLQL
:. .. :. .::: :
XP_005 GKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVK
310 320 330 340 350 360
353 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:40:47 2016 done: Sat Nov 5 18:40:48 2016
Total Scan time: 9.000 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]