Result of FASTA (ccds) for
pF1KE0785
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0785, 353 aa
1>>>pF1KE0785 353 - 353 aa - 353 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5565+/-0.000659; mu= 17.1167+/- 0.040
mean_var=97.3614+/-19.706, 0's: 0 Z-trim(113.6): 61 B-trim: 650 in 1/51
Lambda= 0.129981
statistics sampled from 14198 (14262) to 14198 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.438), width: 16
Scan time: 3.220
The best scores are: opt bits E(32554)
CCDS4236.1 DND1 gene_id:373863|Hs108|chr5 ( 353) 2429 465.1 3.9e-131
CCDS64086.1 RBM46 gene_id:166863|Hs108|chr4 ( 470) 640 129.8 4.7e-30
CCDS64085.1 RBM46 gene_id:166863|Hs108|chr4 ( 485) 640 129.8 4.8e-30
CCDS3790.1 RBM46 gene_id:166863|Hs108|chr4 ( 533) 640 129.8 5.1e-30
CCDS7241.1 A1CF gene_id:29974|Hs108|chr10 ( 586) 612 124.6 2.1e-28
CCDS7242.1 A1CF gene_id:29974|Hs108|chr10 ( 594) 612 124.6 2.1e-28
CCDS3460.1 RBM47 gene_id:54502|Hs108|chr4 ( 524) 610 124.2 2.5e-28
CCDS43223.1 RBM47 gene_id:54502|Hs108|chr4 ( 593) 610 124.2 2.7e-28
CCDS7243.1 A1CF gene_id:29974|Hs108|chr10 ( 594) 562 115.2 1.4e-25
CCDS73133.1 A1CF gene_id:29974|Hs108|chr10 ( 602) 562 115.2 1.4e-25
CCDS232.1 HNRNPR gene_id:10236|Hs108|chr1 ( 633) 469 97.8 2.6e-20
CCDS75491.1 SYNCRIP gene_id:10492|Hs108|chr6 ( 464) 463 96.6 4.6e-20
CCDS55041.1 SYNCRIP gene_id:10492|Hs108|chr6 ( 562) 463 96.6 5.2e-20
CCDS5005.1 SYNCRIP gene_id:10492|Hs108|chr6 ( 623) 463 96.7 5.6e-20
CCDS60020.1 HNRNPR gene_id:10236|Hs108|chr1 ( 535) 457 95.5 1.1e-19
CCDS44085.1 HNRNPR gene_id:10236|Hs108|chr1 ( 636) 457 95.6 1.2e-19
CCDS72726.1 HNRNPR gene_id:10236|Hs108|chr1 ( 494) 358 76.9 4e-14
CCDS72727.1 HNRNPR gene_id:10236|Hs108|chr1 ( 595) 358 77.0 4.6e-14
>>CCDS4236.1 DND1 gene_id:373863|Hs108|chr5 (353 aa)
initn: 2429 init1: 2429 opt: 2429 Z-score: 2467.7 bits: 465.1 E(32554): 3.9e-131
Smith-Waterman score: 2429; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353)
10 20 30 40 50 60
pF1KE0 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 HPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRSPQPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRSPQPEG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 SQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQVVIPGHPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQVVIPGHPVP
250 260 270 280 290 300
310 320 330 340 350
pF1KE0 FSGLIWVVLTLDGRDGHEVAKDAVSVRLLQALSESGANLLWSAGAEAGTMVKQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FSGLIWVVLTLDGRDGHEVAKDAVSVRLLQALSESGANLLWSAGAEAGTMVKQ
310 320 330 340 350
>>CCDS64086.1 RBM46 gene_id:166863|Hs108|chr4 (470 aa)
initn: 601 init1: 543 opt: 640 Z-score: 653.1 bits: 129.8 E(32554): 4.7e-30
Smith-Waterman score: 640; 42.6% identity (72.7% similar) in 209 aa overlap (13-219:16-224)
10 20 30 40 50
pF1KE0 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAG
:.. .:.::: : ...:: .:: :::::.::::::: : ::: :
CCDS64 MNEENIDGTNGCSKVRTGIQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 SEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIAT
:::.:..:.:.:: .:.:.:.:.:..::::::: ::: :::.:.. :.... :: ::
CCDS64 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 LHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPA
:.:. .::. . :: : ..:.: . ..: . . .: .. . :. .. . ::
CCDS64 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 PGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRS
. .:.... ::::::::.. :. : .: :. . :.: :.
CCDS64 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 PQPEGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQVVIP
CCDS64 RNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGAS
250 260 270 280 290 300
>>CCDS64085.1 RBM46 gene_id:166863|Hs108|chr4 (485 aa)
initn: 601 init1: 543 opt: 640 Z-score: 652.9 bits: 129.8 E(32554): 4.8e-30
Smith-Waterman score: 640; 42.6% identity (72.7% similar) in 209 aa overlap (13-219:16-224)
10 20 30 40 50
pF1KE0 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAG
:.. .:.::: : ...:: .:: :::::.::::::: : ::: :
CCDS64 MNEENIDGTNGCSKVRTGIQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 SEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIAT
:::.:..:.:.:: .:.:.:.:.:..::::::: ::: :::.:.. :.... :: ::
CCDS64 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 LHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPA
:.:. .::. . :: : ..:.: . ..: . . .: .. . :. .. . ::
CCDS64 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 PGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRS
. .:.... ::::::::.. :. : .: :. . :.: :.
CCDS64 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 PQPEGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQVVIP
CCDS64 RNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGAS
250 260 270 280 290 300
>>CCDS3790.1 RBM46 gene_id:166863|Hs108|chr4 (533 aa)
initn: 601 init1: 543 opt: 640 Z-score: 652.3 bits: 129.8 E(32554): 5.1e-30
Smith-Waterman score: 640; 42.6% identity (72.7% similar) in 209 aa overlap (13-219:16-224)
10 20 30 40 50
pF1KE0 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAG
:.. .:.::: : ...:: .:: :::::.::::::: : ::: :
CCDS37 MNEENIDGTNGCSKVRTGIQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 SEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIAT
:::.:..:.:.:: .:.:.:.:.:..::::::: ::: :::.:.. :.... :: ::
CCDS37 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 LHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPA
:.:. .::. . :: : ..:.: . ..: . . .: .. . :. .. . ::
CCDS37 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 PGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRS
. .:.... ::::::::.. :. : .: :. . :.: :.
CCDS37 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 PQPEGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQVVIP
CCDS37 RNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGAS
250 260 270 280 290 300
>>CCDS7241.1 A1CF gene_id:29974|Hs108|chr10 (586 aa)
initn: 639 init1: 505 opt: 612 Z-score: 623.4 bits: 124.6 E(32554): 2.1e-28
Smith-Waterman score: 612; 42.5% identity (74.4% similar) in 207 aa overlap (17-221:15-221)
10 20 30 40 50 60
pF1KE0 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEV
...:::.: :..:: ::: ::::::::::::: ..:: : :.
CCDS72 MESNHKSGDGLSGTQKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCEI
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 FIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHN
:::.::.:..: .:::: ...:..::.:.:: :.: :::.:.. .:.. :. :: :.:
CCDS72 FIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 HPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ
. .: . : :: :...:.: : :.: . : .: .. . :. .. . :: . .
CCDS72 YEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKN
120 130 140 150 160 170
190 200 210 220 230
pF1KE0 --IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRSPQP
.:.... ::::::::.. :. :. .: :. .::.: .:...
CCDS72 RGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 EGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQVVIPGHP
CCDS72 MLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV
240 250 260 270 280 290
>>CCDS7242.1 A1CF gene_id:29974|Hs108|chr10 (594 aa)
initn: 639 init1: 505 opt: 612 Z-score: 623.4 bits: 124.6 E(32554): 2.1e-28
Smith-Waterman score: 612; 42.5% identity (74.4% similar) in 207 aa overlap (17-221:15-221)
10 20 30 40 50 60
pF1KE0 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEV
...:::.: :..:: ::: ::::::::::::: ..:: : :.
CCDS72 MESNHKSGDGLSGTQKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCEI
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 FIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHN
:::.::.:..: .:::: ...:..::.:.:: :.: :::.:.. .:.. :. :: :.:
CCDS72 FIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 HPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ
. .: . : :: :...:.: : :.: . : .: .. . :. .. . :: . .
CCDS72 YEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKN
120 130 140 150 160 170
190 200 210 220 230
pF1KE0 --IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRSPQP
.:.... ::::::::.. :. :. .: :. .::.: .:...
CCDS72 RGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 EGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQVVIPGHP
CCDS72 MLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV
240 250 260 270 280 290
>>CCDS3460.1 RBM47 gene_id:54502|Hs108|chr4 (524 aa)
initn: 640 init1: 480 opt: 610 Z-score: 622.0 bits: 124.2 E(32554): 2.5e-28
Smith-Waterman score: 610; 43.4% identity (71.7% similar) in 205 aa overlap (18-220:31-235)
10 20 30 40
pF1KE0 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPP
:.::: : ...:: .:: :::::::::::
CCDS34 MTAEDSTAAMSSDSAAGSSAKVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 GWVGSPPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSS
:: : : : :::.:..:.:::: .:.:.:. :::.::.:::: :.: :::.:.. :
CCDS34 GWEGPHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCH
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 RRGAQAAIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQE
.. :. :. :.:. .::. : :: :...:.: . :.: : .: . . :. .
CCDS34 KHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLD
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 ARLLPSPGPAPGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLR
. . : . . .:.... ::::::::.. :. :. .: :.:.::.: .:..
CCDS34 VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE0 QQLVGPFLRSPQPEGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGW
CCDS34 VMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNN
250 260 270 280 290 300
>>CCDS43223.1 RBM47 gene_id:54502|Hs108|chr4 (593 aa)
initn: 640 init1: 480 opt: 610 Z-score: 621.3 bits: 124.2 E(32554): 2.7e-28
Smith-Waterman score: 610; 43.4% identity (71.7% similar) in 205 aa overlap (18-220:31-235)
10 20 30 40
pF1KE0 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPP
:.::: : ...:: .:: :::::::::::
CCDS43 MTAEDSTAAMSSDSAAGSSAKVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 GWVGSPPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSS
:: : : : :::.:..:.:::: .:.:.:. :::.::.:::: :.: :::.:.. :
CCDS43 GWEGPHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCH
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 RRGAQAAIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQE
.. :. :. :.:. .::. : :: :...:.: . :.: : .: . . :. .
CCDS43 KHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLD
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 ARLLPSPGPAPGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLR
. . : . . .:.... ::::::::.. :. :. .: :.:.::.: .:..
CCDS43 VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE0 QQLVGPFLRSPQPEGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGW
CCDS43 VMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNN
250 260 270 280 290 300
>>CCDS7243.1 A1CF gene_id:29974|Hs108|chr10 (594 aa)
initn: 588 init1: 454 opt: 562 Z-score: 572.7 bits: 115.2 E(32554): 1.4e-25
Smith-Waterman score: 562; 40.4% identity (72.4% similar) in 203 aa overlap (21-221:29-229)
10 20 30 40 50
pF1KE0 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGS
::.. . .: : . ::::::::::::: ..
CCDS72 MEAVCLGTCPEPEASMSTAIPGLKKGNNALQSIILQT--LLEKENGQRKYGGPPPGWDAA
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 PPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQ
:: : :.:::.::.:..: .:::: ...:..::.:.:: :.: :::.:.. .:.. :.
CCDS72 PPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 AAIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLP
:: :.:. .: . : :: :...:.: : :.: . : .: .. . :. .. . :
CCDS72 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 SPGPAPGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVG
: . . .:.... ::::::::.. :. :. .: :. .::.: .:...
CCDS72 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSV
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 PFLRSPQPEGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWY
CCDS72 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKV
240 250 260 270 280 290
>>CCDS73133.1 A1CF gene_id:29974|Hs108|chr10 (602 aa)
initn: 588 init1: 454 opt: 562 Z-score: 572.6 bits: 115.2 E(32554): 1.4e-25
Smith-Waterman score: 562; 40.4% identity (72.4% similar) in 203 aa overlap (21-221:29-229)
10 20 30 40 50
pF1KE0 MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGS
::.. . .: : . ::::::::::::: ..
CCDS73 MEAVCLGTCPEPEASMSTAIPGLKKGNNALQSIILQT--LLEKENGQRKYGGPPPGWDAA
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 PPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQ
:: : :.:::.::.:..: .:::: ...:..::.:.:: :.: :::.:.. .:.. :.
CCDS73 PPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 AAIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLP
:: :.:. .: . : :: :...:.: : :.: . : .: .. . :. .. . :
CCDS73 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 SPGPAPGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVG
: . . .:.... ::::::::.. :. :. .: :. .::.: .:...
CCDS73 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSV
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 PFLRSPQPEGSQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWY
CCDS73 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKV
240 250 260 270 280 290
353 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:40:46 2016 done: Sat Nov 5 18:40:47 2016
Total Scan time: 3.220 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]