FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0774, 445 aa
  1>>>pF1KE0774 445 - 445 aa - 445 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2755+/-0.000836; mu= 17.4705+/- 0.050
 mean_var=65.2502+/-12.745, 0's: 0 Z-trim(106.4): 21  B-trim: 56 in 2/49
 Lambda= 0.158775
 statistics sampled from 8973 (8988) to 8973 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.276), width:  16
 Scan time:  2.820

The best scores are:                                      opt bits E(32554)
CCDS7110.1 FAM188A gene_id:80013|Hs108|chr10       ( 445) 3000 696.1 1.8e-200
CCDS43565.1 FAM188B gene_id:84182|Hs108|chr7       ( 757)  295 76.6 9.5e-14


>>CCDS7110.1 FAM188A gene_id:80013|Hs108|chr10            (445 aa)
 initn: 3000 init1: 3000 opt: 3000  Z-score: 3712.5  bits: 696.1 E(32554): 1.8e-200
Smith-Waterman score: 3000; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445)

               10        20        30        40        50        60
pF1KE0 MSELTKELMELVWGTKSSPGLSDTIFCRWTQGFVFSESEGSALEQFEGGPCAVIAPVQAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MSELTKELMELVWGTKSSPGLSDTIFCRWTQGFVFSESEGSALEQFEGGPCAVIAPVQAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LLKKLLFSSEKSSWRDCSEEEQKELLCHTLCDILESACCDHSGSYCLVSWLRGKTTEETA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 LLKKLLFSSEKSSWRDCSEEEQKELLCHTLCDILESACCDHSGSYCLVSWLRGKTTEETA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SISGSPAESSCQVEHSSALAVEELGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SISGSPAESSCQVEHSSALAVEELGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 VLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDREC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 VLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDREC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 SGMKLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SGMKLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 PEAPSEQARRVFQTYDPEDNGFIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 PEAPSEQARRVFQTYDPEDNGFIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIIL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 LGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 LGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTP
              370       380       390       400       410       420

              430       440     
pF1KE0 IKRCLQTKWPYIELLWTTDRSPSLN
       :::::::::::::::::::::::::
CCDS71 IKRCLQTKWPYIELLWTTDRSPSLN
              430       440     

>>CCDS43565.1 FAM188B gene_id:84182|Hs108|chr7            (757 aa)
 initn: 316 init1: 185 opt: 295  Z-score: 360.3  bits: 76.6 E(32554): 9.5e-14
Smith-Waterman score: 402; 29.9% identity (60.8% similar) in 324 aa overlap (4-315:411-701)

                                          10        20             
pF1KE0                            MSELTKELMELVWGTKSSPGLSDTIFC----RW
                                     ..::.  :..:..         ::    .:
CCDS43 EDELIREEVILSPVPSVLKLQTASKPIDLSVAKEIKTLLFGSS---------FCCFNEEW
              390       400       410       420                430 

      30         40          50        60        70        80      
pF1KE0 T-QGFVFSESEG--SALEQFEGGPCAVIAPVQAFLLKKLLFSSEKSSWRDCSEEEQKELL
         :.: ::.. .   .. : .::::.:.: ::. .:.::::  : .:  ::..  :    
CCDS43 KLQSFSFSNTASLKYGIVQNKGGPCGVLAAVQGCVLQKLLF--EGDSKADCAQGLQPSDA
             440       450       460       470         480         

         90       100       110       120       130       140      
pF1KE0 CHTLCDILESACCDHSGSYCLVSWLRGKTTEETASISGSPAESSCQVEHSSALAVEELGF
        .: : .:  :  :       . :  :   . ......   . :   ....  ..: :  
CCDS43 HRTRCLVL--ALAD-------IVWRAGGRERAVVALASRTQQFSPTGKYKADGVLETL--
     490         500              510       520       530          

        150       160       170       180       190       200      
pF1KE0 ERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFGVLLFLYSVLLTKGIENIKNEIEDASE
         .:.:     ...:  . .  . :. .  . .: .:.  :..:... : :.....  . 
CCDS43 -TLHSLT---CYEDLVTFLQQSIHQFEV--GPYGCILLTLSAILSRSTELIRQDFDVPTS
       540          550       560         570       580       590  

        210       220       230       240            250       260 
pF1KE0 PLIDPVYGHGSQSLINLLLTGHAVSNVWDGDREC-SG---MKLL-GIHEQAAVGFLTLME
        ::  ..:. .: :.::::::.:::::..   :  ::   . :: ::  .. .:::.:.:
CCDS43 HLIG-AHGYCTQELVNLLLTGKAVSNVFNDVVELDSGDGNITLLRGIAARSDIGFLSLFE
             600       610       620       630       640       650 

             270       280       290       300       310       320 
pF1KE0 ALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNG
          .:.:: .::.:.::::.: ::.:....:. . .:.     . ...:.:. :      
CCDS43 HYNMCQVGCFLKTPRFPIWVVCSESHFSILFSLQPGLLR----DWRTERLFDLYYYDGLA
             660       670       680       690           700       

             330       340       350       360       370       380 
pF1KE0 FIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFT
                                                                   
CCDS43 NQQEQIRLTIDTTQTISEDTDNDLVPPLELCIRTKWKGASVNWNGSDPIL          
       710       720       730       740       750                 




445 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:22:57 2016 done: Sat Nov  5 04:22:57 2016
 Total Scan time:  2.820 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]