FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0769, 339 aa
  1>>>pF1KE0769 339 - 339 aa - 339 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8773+/-0.000648; mu= 14.4107+/- 0.039
 mean_var=87.9519+/-17.753, 0's: 0 Z-trim(113.6): 10  B-trim: 726 in 1/50
 Lambda= 0.136758
 statistics sampled from 14243 (14251) to 14243 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.438), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS41280.1 SH2D5 gene_id:400745|Hs108|chr1        ( 339) 2387 480.2 1.1e-135
CCDS44080.1 SH2D5 gene_id:400745|Hs108|chr1        ( 423) 2387 480.3 1.3e-135


>>CCDS41280.1 SH2D5 gene_id:400745|Hs108|chr1             (339 aa)
 initn: 2387 init1: 2387 opt: 2387  Z-score: 2549.8  bits: 480.2 E(32554): 1.1e-135
Smith-Waterman score: 2387; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KE0 MAHALRRILYSTWCPADCQFAFMARNPRSPASKLFCHLFVGSQPGEVQILHLLLCRSFQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAHALRRILYSTWCPADCQFAFMARNPRSPASKLFCHLFVGSQPGEVQILHLLLCRSFQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AYLLQHPEERAQPEPCPGPTGEVPLKPLSSSGGLVREPFGRDQLSQNVHALVSFRRLPAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AYLLQHPEERAQPEPCPGPTGEVPLKPLSSSGGLVREPFGRDQLSQNVHALVSFRRLPAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GLVGSGKELPESEGRARHARLGNPYCSPTLVRKKAIRSKVIRSGAYRGCTYETQLQLSAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GLVGSGKELPESEGRARHARLGNPYCSPTLVRKKAIRSKVIRSGAYRGCTYETQLQLSAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EAFPAAWEAWPRGPGGHSCLVESEGSLTENIWAFAGISRPCALALLRRDVLGAFLLWPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EAFPAAWEAWPRGPGGHSCLVESEGSLTENIWAFAGISRPCALALLRRDVLGAFLLWPEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GASGQWCLSVRTQCGVVPHQVFRNHLGRYCLEHLPAEFPSLEALVENHAVTERSLFCPLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GASGQWCLSVRTQCGVVPHQVFRNHLGRYCLEHLPAEFPSLEALVENHAVTERSLFCPLD
              250       260       270       280       290       300

              310       320       330         
pF1KE0 MGRLNPTYEEQDCGPPGRPPRTLRPLSHAKSEAELQGLG
       :::::::::::::::::::::::::::::::::::::::
CCDS41 MGRLNPTYEEQDCGPPGRPPRTLRPLSHAKSEAELQGLG
              310       320       330         

>>CCDS44080.1 SH2D5 gene_id:400745|Hs108|chr1             (423 aa)
 initn: 2387 init1: 2387 opt: 2387  Z-score: 2548.4  bits: 480.3 E(32554): 1.3e-135
Smith-Waterman score: 2387; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:85-423)

                                             10        20        30
pF1KE0                               MAHALRRILYSTWCPADCQFAFMARNPRSP
                                     ::::::::::::::::::::::::::::::
CCDS44 LKDCPRRRAVILKFSLQGLKIYSGEGEVLLMAHALRRILYSTWCPADCQFAFMARNPRSP
           60        70        80        90       100       110    

               40        50        60        70        80        90
pF1KE0 ASKLFCHLFVGSQPGEVQILHLLLCRSFQLAYLLQHPEERAQPEPCPGPTGEVPLKPLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ASKLFCHLFVGSQPGEVQILHLLLCRSFQLAYLLQHPEERAQPEPCPGPTGEVPLKPLSS
          120       130       140       150       160       170    

              100       110       120       130       140       150
pF1KE0 SGGLVREPFGRDQLSQNVHALVSFRRLPAEGLVGSGKELPESEGRARHARLGNPYCSPTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SGGLVREPFGRDQLSQNVHALVSFRRLPAEGLVGSGKELPESEGRARHARLGNPYCSPTL
          180       190       200       210       220       230    

              160       170       180       190       200       210
pF1KE0 VRKKAIRSKVIRSGAYRGCTYETQLQLSAREAFPAAWEAWPRGPGGHSCLVESEGSLTEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VRKKAIRSKVIRSGAYRGCTYETQLQLSAREAFPAAWEAWPRGPGGHSCLVESEGSLTEN
          240       250       260       270       280       290    

              220       230       240       250       260       270
pF1KE0 IWAFAGISRPCALALLRRDVLGAFLLWPELGASGQWCLSVRTQCGVVPHQVFRNHLGRYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IWAFAGISRPCALALLRRDVLGAFLLWPELGASGQWCLSVRTQCGVVPHQVFRNHLGRYC
          300       310       320       330       340       350    

              280       290       300       310       320       330
pF1KE0 LEHLPAEFPSLEALVENHAVTERSLFCPLDMGRLNPTYEEQDCGPPGRPPRTLRPLSHAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LEHLPAEFPSLEALVENHAVTERSLFCPLDMGRLNPTYEEQDCGPPGRPPRTLRPLSHAK
          360       370       380       390       400       410    

                
pF1KE0 SEAELQGLG
       :::::::::
CCDS44 SEAELQGLG
          420   




339 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 03:06:28 2016 done: Sat Nov  5 03:06:28 2016
 Total Scan time:  2.750 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]