Result of FASTA (ccds) for
pF1KE0757
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0757, 330 aa
1>>>pF1KE0757 330 - 330 aa - 330 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2079+/-0.000829; mu= 0.0796+/- 0.050
mean_var=254.5739+/-52.260, 0's: 0 Z-trim(116.5): 46 B-trim: 145 in 1/51
Lambda= 0.080384
statistics sampled from 17077 (17122) to 17077 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.526), width: 16
Scan time: 3.260
The best scores are: opt bits E(32554)
CCDS4152.1 PDLIM4 gene_id:8572|Hs108|chr5 ( 330) 2312 280.4 1.4e-75
CCDS47261.1 PDLIM4 gene_id:8572|Hs108|chr5 ( 246) 1570 194.3 8.8e-50
CCDS7441.1 PDLIM1 gene_id:9124|Hs108|chr10 ( 329) 906 117.4 1.7e-26
CCDS75218.1 PDLIM3 gene_id:27295|Hs108|chr4 ( 197) 545 75.3 4.5e-14
CCDS75219.1 PDLIM3 gene_id:27295|Hs108|chr4 ( 276) 545 75.4 5.8e-14
CCDS47172.1 PDLIM3 gene_id:27295|Hs108|chr4 ( 316) 536 74.4 1.3e-13
CCDS3844.1 PDLIM3 gene_id:27295|Hs108|chr4 ( 364) 536 74.5 1.5e-13
>>CCDS4152.1 PDLIM4 gene_id:8572|Hs108|chr5 (330 aa)
initn: 2312 init1: 2312 opt: 2312 Z-score: 1470.5 bits: 280.4 E(32554): 1.4e-75
Smith-Waterman score: 2312; 99.7% identity (99.7% similar) in 330 aa overlap (1-330:1-330)
10 20 30 40 50 60
pF1KE0 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 THLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 THLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPARGLPRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPARGLPRSR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 DCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPRNLKPTAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPRNLKPTAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 KLGAPLSGLQGLPECTRCCHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERL
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS41 KLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERL
250 260 270 280 290 300
310 320 330
pF1KE0 YCESHAKARVKPPEGYDVVAVYPNAKVELV
::::::::::::::::::::::::::::::
CCDS41 YCESHAKARVKPPEGYDVVAVYPNAKVELV
310 320 330
>>CCDS47261.1 PDLIM4 gene_id:8572|Hs108|chr5 (246 aa)
initn: 1570 init1: 1570 opt: 1570 Z-score: 1007.2 bits: 194.3 E(32554): 8.8e-50
Smith-Waterman score: 1570; 95.0% identity (96.2% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KE0 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 THLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 THLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPARGLPRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPARGLPRSR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 DCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPRNLKPTAS
:::::::::::::::::::::::::::::::::::::::::::: . : . :.::
CCDS47 DCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGAPSSRHGTSSTIPSAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 KLGAPLSGLQGLPECTRCCHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERL
CCDS47 CAVTAA
>>CCDS7441.1 PDLIM1 gene_id:9124|Hs108|chr10 (329 aa)
initn: 924 init1: 474 opt: 906 Z-score: 589.3 bits: 117.4 E(32554): 1.7e-26
Smith-Waterman score: 906; 44.6% identity (67.5% similar) in 332 aa overlap (3-323:4-328)
10 20 30 40 50
pF1KE0 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTEL
... :.::.:::::::::.:: ::.:::: ::::::: :: ::.: ::.::.:
CCDS74 MTTQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 MTHLEAQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQD----GSP-
::::::::::::: :.:::.:.: : . : : . ...: . ..... : :. ::
CCDS74 MTHLEAQNRIKGCTDNLTLTVARSEHKVWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAH
70 80 90 100 110 120
120 130 140 150 160
pF1KE0 TTSRRPSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSS-----EATLPAQMSTLHVSPPP
. : : .. . . . :..: . .: :. :. :. . :
CCDS74 NRSAMPFTASPASSTTARVITNQYNNPAGLYSSENISNFNNALESKTAASGVEANSRPLD
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 SADPARGLPRSRDCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGDWPG
:.: .: .: ::::.::.: : . :::: :: :: .::. : ::
CCDS74 HAQPPSSL------VIDKESEVYKMLQEKQE-LNEPPKQSTSFLVLQEILESEEKGDPNK
190 200 210 220 230
230 240 250 260 270 280
pF1KE0 PGGPRNLKPTASKLGAPLSGLQGLPECTRCCHGIVGTIVKARDKLYHPECFMCSDCGLNL
:.: :..: ..:..: ... : :: : .: ::::..:: ::. ::::..:.::: ::
CCDS74 PSGFRSVKAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNL
240 250 260 270 280 290
290 300 310 320 330
pF1KE0 KQRGYFFLDERLYCESHAKARVKPPEGYDVVAVYPNAKVELV
::.:.::.....:::.::. :: :::::.::.:.:
CCDS74 KQKGHFFVEDQIYCEKHARERVTPPEGYEVVTVFPK
300 310 320
>>CCDS75218.1 PDLIM3 gene_id:27295|Hs108|chr4 (197 aa)
initn: 606 init1: 363 opt: 545 Z-score: 366.0 bits: 75.3 E(32554): 4.5e-14
Smith-Waterman score: 550; 43.6% identity (67.6% similar) in 204 aa overlap (123-325:9-197)
100 110 120 130 140 150
pF1KE0 DDSKAQAHRIHIDPEIQDGSPTTSRRPSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSE
: .: : : : ..:: . . ..:.
CCDS75 MPQTVILPGPAPWGFRLSGGIDFNQP--LVITRDGNYF
10 20 30
160 170 180 190 200 210
pF1KE0 ATLPAQMSTLHVSPPPSADPARGLPRSRDCRVDLGSEVYRMLREP-AEPVAAEPKQSGSF
: : :..:. ..: : :::::.. ::. .:.:::::
CCDS75 EHKHNIRPKPFVIPGRSSEPTASVPPESD--------VYRMLHDNRNEPT--QPRQSGSF
40 50 60 70 80
220 230 240 250 260 270
pF1KE0 RYLQGMLEAGEGGDWPGPGGPRNLKPTASKLGAPLSGLQGLPECTRCCHGIVGTIVKARD
: ::::.. .:.: :.: :... ..:. . .: : .: : .: ::::..:::::
CCDS75 RVLQGMVD--DGSD-DRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARD
90 100 110 120 130 140
280 290 300 310 320 330
pF1KE0 KLYHPECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKPPEGYDVVAVYPNAKVELV
: :::::.:.::.:::::.::::.. .::::.::.::.:::::::.:..::.:
CCDS75 KYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTLYPKA
150 160 170 180 190
>>CCDS75219.1 PDLIM3 gene_id:27295|Hs108|chr4 (276 aa)
initn: 827 init1: 363 opt: 545 Z-score: 364.1 bits: 75.4 E(32554): 5.8e-14
Smith-Waterman score: 869; 45.0% identity (66.7% similar) in 327 aa overlap (1-325:1-276)
10 20 30 40 50 60
pF1KE0 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
::..: : ::.:::::: :: ::. ::.:.:. ::::: : :::::.: ::.: .:: :
CCDS75 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 THLEAQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQDGSPTTSRRP
:: .::.:::. .: :...: : . : :.. .:.::. .:... : :::. ..
CCDS75 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKH-
70 80 90 100 110
120 130 140 150 160 170
pF1KE0 SGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPARGLPRS
. ::. :. : : ::: : .: :: .:
CCDS75 --------NIRPK---PFVIPGR-------SSEPT---------ASVPPESD--------
120 130 140
180 190 200 210 220 230
pF1KE0 RDCRVDLGSEVYRMLREP-AEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPRNLKPT
:::::.. ::. .:.:::::: ::::.. .:.: :.: :...
CCDS75 ----------VYRMLHDNRNEPT--QPRQSGSFRVLQGMVD--DGSD-DRPAGTRSVRAP
150 160 170 180
240 250 260 270 280 290
pF1KE0 ASKLGAPLSGLQGLPECTRCCHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDE
..:. . .: : .: : .: ::::..:::::: :::::.:.::.:::::.::::..
CCDS75 VTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEG
190 200 210 220 230 240
300 310 320 330
pF1KE0 RLYCESHAKARVKPPEGYDVVAVYPNAKVELV
.::::.::.::.:::::::.:..::.:
CCDS75 ELYCETHARARTKPPEGYDTVTLYPKA
250 260 270
>>CCDS47172.1 PDLIM3 gene_id:27295|Hs108|chr4 (316 aa)
initn: 796 init1: 363 opt: 536 Z-score: 357.7 bits: 74.4 E(32554): 1.3e-13
Smith-Waterman score: 923; 44.3% identity (71.7% similar) in 332 aa overlap (1-325:1-316)
10 20 30 40 50 60
pF1KE0 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
::..: : ::.:::::: :: ::. ::.:.:. ::::: : :::::.: ::.: .:: :
CCDS47 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 THLEAQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQDGSPTTS---
:: .::.:::. .: :...: : . : :.. .:.::. .:... : :. .: .
CCDS47 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 RR--PSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPAR
:: : .... .: : ... :..: . . ... . .: .:. : . :. .:.
CCDS47 RRAQPFVAAANIDDKRQVVSASYNSP--IGLYSTSNIQDALHGQLRGL-IPSSPQNEPTA
130 140 150 160 170
180 190 200 210 220 230
pF1KE0 GLPRSRDCRVDLGSEVYRMLREP-AEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPR
..: : :::::.. :: ..:.:::::: ::::.. .:.: :.: :
CCDS47 SVPPESD--------VYRMLHDNRNEP--TQPRQSGSFRVLQGMVD--DGSD-DRPAGTR
180 190 200 210 220
240 250 260 270 280 290
pF1KE0 NLKPTASKLGAPLSGLQGLPECTRCCHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGY
... ..:. . .: : .: : .: ::::..:::::: :::::.:.::.:::::.::
CCDS47 SVRAPVTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGY
230 240 250 260 270 280
300 310 320 330
pF1KE0 FFLDERLYCESHAKARVKPPEGYDVVAVYPNAKVELV
::.. .::::.::.::.:::::::.:..::.:
CCDS47 FFIEGELYCETHARARTKPPEGYDTVTLYPKA
290 300 310
>>CCDS3844.1 PDLIM3 gene_id:27295|Hs108|chr4 (364 aa)
initn: 849 init1: 363 opt: 536 Z-score: 356.9 bits: 74.5 E(32554): 1.5e-13
Smith-Waterman score: 842; 42.3% identity (62.9% similar) in 364 aa overlap (9-325:9-364)
10 20 30 40 50 60
pF1KE0 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
::.:::::: :: ::. ::.:.:. ::::: : :::::.: ::.: .:: :
CCDS38 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 THLEAQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQDGS-------
:: .::.:::. .: :...: : . : :.. .:.::. .:... : :::.
CCDS38 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN
70 80 90 100 110 120
120 130 140
pF1KE0 --------PTTSR---RPSGTGTGPEDGRPSLGSPYGQ--P----------PRFPVPHN-
: : ::: : . :: : . : : .:. .
CCDS38 IRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL
130 140 150 160 170 180
150 160 170 180 190
pF1KE0 -G----SSEATLPAQ-------MSTLH--VSPPPSADPARGLPRSRDCRVDLGSEVYRML
: .. . : : : ::. :: . : . : . : :.:::::
CCDS38 PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTAS---VPPESDVYRML
190 200 210 220 230
200 210 220 230 240 250
pF1KE0 REP-AEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPRNLKPTASKLGAPLSGLQGLP
.. :: ..:.:::::: ::::.. .:.: :.: :... ..:. . .: : .:
CCDS38 HDNRNEP--TQPRQSGSFRVLQGMVD--DGSD-DRPAGTRSVRAPVTKVHGGSGGAQRMP
240 250 260 270 280 290
260 270 280 290 300 310
pF1KE0 ECTRCCHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKPP
: .: ::::..:::::: :::::.:.::.:::::.::::.. .::::.::.::.:::
CCDS38 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPP
300 310 320 330 340 350
320 330
pF1KE0 EGYDVVAVYPNAKVELV
::::.:..::.:
CCDS38 EGYDTVTLYPKA
360
330 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 03:04:17 2016 done: Sat Nov 5 03:04:18 2016
Total Scan time: 3.260 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]