FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0754, 430 aa
  1>>>pF1KE0754 430 - 430 aa - 430 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6361+/-0.00121; mu= 8.3229+/- 0.073
 mean_var=184.5568+/-37.543, 0's: 0 Z-trim(108.0): 115  B-trim: 567 in 1/48
 Lambda= 0.094408
 statistics sampled from 9838 (9960) to 9838 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.306), width:  16
 Scan time:  2.600

The best scores are:                                      opt bits E(32554)
CCDS41477.2 RBM34 gene_id:23029|Hs108|chr1         ( 430) 2752 387.4 1.4e-107


>>CCDS41477.2 RBM34 gene_id:23029|Hs108|chr1              (430 aa)
 initn: 2752 init1: 2752 opt: 2752  Z-score: 2044.8  bits: 387.4 E(32554): 1.4e-107
Smith-Waterman score: 2752; 100.0% identity (100.0% similar) in 430 aa overlap (1-430:1-430)

               10        20        30        40        50        60
pF1KE0 MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 SAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 RSVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKSLFIGEKAVLLKTKKKGQKKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RSVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKSLFIGEKAVLLKTKKKGQKKS
              370       380       390       400       410       420

              430
pF1KE0 GRPKKQRKQK
       ::::::::::
CCDS41 GRPKKQRKQK
              430




430 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:20:39 2016 done: Sat Nov  5 20:20:40 2016
 Total Scan time:  2.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]