FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0715, 304 aa
  1>>>pF1KE0715 304 - 304 aa - 304 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7919+/-0.000469; mu= -3.2617+/- 0.029
 mean_var=323.0168+/-64.940, 0's: 0 Z-trim(119.4): 59  B-trim: 841 in 1/57
 Lambda= 0.071361
 statistics sampled from 33336 (33395) to 33336 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.392), width:  16
 Scan time:  6.280

The best scores are:                                      opt bits E(85289)
NP_060633 (OMIM: 616844) dnaJ homolog subfamily C  ( 304) 1930 212.0 1.2e-54
XP_016877890 (OMIM: 616844) PREDICTED: dnaJ homolo ( 308) 1777 196.2 6.9e-50
XP_016877891 (OMIM: 616844) PREDICTED: dnaJ homolo ( 224) 1127 129.1 7.7e-30
NP_068572 (OMIM: 606060) dnaJ homolog subfamily C  ( 198)  258 39.6   0.006


>>NP_060633 (OMIM: 616844) dnaJ homolog subfamily C memb  (304 aa)
 initn: 1930 init1: 1930 opt: 1930  Z-score: 1101.8  bits: 212.0 E(85289): 1.2e-54
Smith-Waterman score: 1930; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KE0 MAVTKELLQMDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAVTKELLQMDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EVLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEEESRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EVLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEEESRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TRTLEQEIERLREEGSRQLEEQQRLIREQIRQERDQRLRGKAENTEGQGTPKLKLKWKCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TRTLEQEIERLREEGSRQLEEQQRLIREQIRQERDQRLRGKAENTEGQGTPKLKLKWKCK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 PLKISWLEGQPQDAVGRSHSGLSKGSVLSERDYESLVMMRMRQAAERQQLIARMQQEDQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PLKISWLEGQPQDAVGRSHSGLSKGSVLSERDYESLVMMRMRQAAERQQLIARMQQEDQE
              250       260       270       280       290       300

           
pF1KE0 GPPT
       ::::
NP_060 GPPT
           

>>XP_016877890 (OMIM: 616844) PREDICTED: dnaJ homolog su  (308 aa)
 initn: 1777 init1: 1777 opt: 1777  Z-score: 1016.6  bits: 196.2 E(85289): 6.9e-50
Smith-Waterman score: 1777; 99.6% identity (100.0% similar) in 279 aa overlap (26-304:30-308)

                   10        20        30        40        50      
pF1KE0     MAVTKELLQMDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQL
                                    .::::::::::::::::::::::::::::::
XP_016 MSSLSFSSVCSSLTFHLKPFEGCVAHSSWQVKKAYRQKALSCHPDKNPDNPRAAELFHQL
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE0 SQALEVLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQALEVLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEE
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KE0 ESRSTRTLEQEIERLREEGSRQLEEQQRLIREQIRQERDQRLRGKAENTEGQGTPKLKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESRSTRTLEQEIERLREEGSRQLEEQQRLIREQIRQERDQRLRGKAENTEGQGTPKLKLK
              130       140       150       160       170       180

        180       190       200       210       220       230      
pF1KE0 WKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG
              190       200       210       220       230       240

        240       250       260       270       280       290      
pF1KE0 LVDNPLKISWLEGQPQDAVGRSHSGLSKGSVLSERDYESLVMMRMRQAAERQQLIARMQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVDNPLKISWLEGQPQDAVGRSHSGLSKGSVLSERDYESLVMMRMRQAAERQQLIARMQQ
              250       260       270       280       290       300

        300    
pF1KE0 EDQEGPPT
       ::::::::
XP_016 EDQEGPPT
               

>>XP_016877891 (OMIM: 616844) PREDICTED: dnaJ homolog su  (224 aa)
 initn: 1182 init1: 1122 opt: 1127  Z-score: 656.7  bits: 129.1 E(85289): 7.7e-30
Smith-Waterman score: 1127; 95.2% identity (97.3% similar) in 188 aa overlap (26-212:30-217)

                   10        20        30        40        50      
pF1KE0     MAVTKELLQMDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQL
                                    .::::::::::::::::::::::::::::::
XP_016 MSSLSFSSVCSSLTFHLKPFEGCVAHSSWQVKKAYRQKALSCHPDKNPDNPRAAELFHQL
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE0 SQALEVLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQALEVLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEE
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KE0 ESRSTRTLEQEIERLREEGSRQLEEQQRLIREQIRQERDQRLRGKAENTEGQGTPKLKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESRSTRTLEQEIERLREEGSRQLEEQQRLIREQIRQERDQRLRGKAENTEGQGTPKLKLK
              130       140       150       160       170       180

        180       190       200        210       220       230     
pF1KE0 WKCKKEDESKGGYSKDVLLRLLQKYGEV-LNLVLSSKKPGTAVVEFATVKAAELAVQNEV
       :::::::::::::::::::::::: : : ..  :::.                       
XP_016 WKCKKEDESKGGYSKDVLLRLLQKVGPVDVHSFLSSQSTSQSTP                
              190       200       210       220                    

         240       250       260       270       280       290     
pF1KE0 GLVDNPLKISWLEGQPQDAVGRSHSGLSKGSVLSERDYESLVMMRMRQAAERQQLIARMQ

>>NP_068572 (OMIM: 606060) dnaJ homolog subfamily C memb  (198 aa)
 initn: 249 init1: 204 opt: 258  Z-score: 173.9  bits: 39.6 E(85289): 0.006
Smith-Waterman score: 262; 29.5% identity (63.2% similar) in 193 aa overlap (11-201:14-193)

                  10        20        30        40        50       
pF1KE0    MAVTKELLQMDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLS
                    : :.::: .: .. ...   .. .:: :::::.:.::.:.: :..:.
NP_068 MDAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQ
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KE0 QALEVLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEEE
       .: :.::.  .:: ::. :..  : .   :. .    .:: ...   :   ....   ::
NP_068 KAKEILTNEESRARYDHWRRS--QMSMPFQQWEALNDSVKTSMHWVVR---GKKDLMLEE
               70        80          90       100          110     

       120       130       140       150       160         170     
pF1KE0 SRSTRTLEQEIERLREEGSRQLEEQQRLIREQIRQERDQRLRGKA--ENTEGQGTPKLKL
       : .:.: ..: :.  :.  :. ::      :. .:.. . :. ..  .:....:   .. 
NP_068 SDKTHTTKMENEECNEQRERKKEELASTA-EKTEQKEPKPLEKSVSPQNSDSSGFADVN-
         120       130       140        150       160       170    

         180       190       200       210       220       230     
pF1KE0 KWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV
        :. . .      .:::.  .::.:.                                  
NP_068 GWHLRFR------WSKDAPSELLRKFRNYEI                             
           180             190                                     




304 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:56:18 2016 done: Sat Nov  5 02:56:18 2016
 Total Scan time:  6.280 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]