FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0715, 304 aa
  1>>>pF1KE0715 304 - 304 aa - 304 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5707+/-0.00108; mu= -1.9353+/- 0.065
 mean_var=302.5830+/-62.304, 0's: 0 Z-trim(111.6): 47  B-trim: 198 in 1/52
 Lambda= 0.073731
 statistics sampled from 12493 (12534) to 12493 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.385), width:  16
 Scan time:  2.930

The best scores are:                                      opt bits E(32554)
CCDS10065.1 DNAJC17 gene_id:55192|Hs108|chr15      ( 304) 1930 218.4 5.5e-57


>>CCDS10065.1 DNAJC17 gene_id:55192|Hs108|chr15           (304 aa)
 initn: 1930 init1: 1930 opt: 1930  Z-score: 1136.6  bits: 218.4 E(32554): 5.5e-57
Smith-Waterman score: 1930; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KE0 MAVTKELLQMDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAVTKELLQMDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EVLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEEESRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EVLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEEESRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TRTLEQEIERLREEGSRQLEEQQRLIREQIRQERDQRLRGKAENTEGQGTPKLKLKWKCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TRTLEQEIERLREEGSRQLEEQQRLIREQIRQERDQRLRGKAENTEGQGTPKLKLKWKCK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 PLKISWLEGQPQDAVGRSHSGLSKGSVLSERDYESLVMMRMRQAAERQQLIARMQQEDQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PLKISWLEGQPQDAVGRSHSGLSKGSVLSERDYESLVMMRMRQAAERQQLIARMQQEDQE
              250       260       270       280       290       300

           
pF1KE0 GPPT
       ::::
CCDS10 GPPT
           




304 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:56:17 2016 done: Sat Nov  5 02:56:17 2016
 Total Scan time:  2.930 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]