FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0703, 293 aa
  1>>>pF1KE0703 293 - 293 aa - 293 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3170+/-0.000397; mu= 18.7464+/- 0.025
 mean_var=181.2578+/-40.662, 0's: 0 Z-trim(116.7): 110  B-trim: 1506 in 1/53
 Lambda= 0.095263
 statistics sampled from 27835 (28010) to 27835 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.328), width:  16
 Scan time:  7.740

The best scores are:                                      opt bits E(85289)
NP_115766 (OMIM: 611970) MKI67 FHA domain-interact ( 293) 1920 276.0 6.1e-74


>>NP_115766 (OMIM: 611970) MKI67 FHA domain-interacting   (293 aa)
 initn: 1920 init1: 1920 opt: 1920  Z-score: 1448.4  bits: 276.0 E(85289): 6.1e-74
Smith-Waterman score: 1920; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KE0 MATFSGPAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MATFSGPAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 IFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 IFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 MPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKKERLLRKKLAKKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKKERLLRKKLAKKG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 IDYDFPSLILQKTESISKTNRQTSTKGQVLRKKKKKVSGTLDTPEKTVDSQGPTPVCTPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 IDYDFPSLILQKTESISKTNRQTSTKGQVLRKKKKKVSGTLDTPEKTVDSQGPTPVCTPT
              190       200       210       220       230       240

              250       260       270       280       290   
pF1KE0 FLERRKSQVAELNDDDKDDEIVFKQPISCVKEEIQETQTPTHSRKKRRRSSNQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 FLERRKSQVAELNDDDKDDEIVFKQPISCVKEEIQETQTPTHSRKKRRRSSNQ
              250       260       270       280       290   




293 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:51:58 2016 done: Sat Nov  5 02:51:59 2016
 Total Scan time:  7.740 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]