FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0703, 293 aa
  1>>>pF1KE0703 293 - 293 aa - 293 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0919+/-0.000964; mu= 13.6017+/- 0.058
 mean_var=142.8537+/-30.840, 0's: 0 Z-trim(109.3): 78  B-trim: 619 in 1/49
 Lambda= 0.107307
 statistics sampled from 10733 (10811) to 10733 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.332), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS2135.1 NIFK gene_id:84365|Hs108|chr2           ( 293) 1920 308.6 3.6e-84


>>CCDS2135.1 NIFK gene_id:84365|Hs108|chr2                (293 aa)
 initn: 1920 init1: 1920 opt: 1920  Z-score: 1624.7  bits: 308.6 E(32554): 3.6e-84
Smith-Waterman score: 1920; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KE0 MATFSGPAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MATFSGPAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 IFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 IFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 MPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKKERLLRKKLAKKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKKERLLRKKLAKKG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 IDYDFPSLILQKTESISKTNRQTSTKGQVLRKKKKKVSGTLDTPEKTVDSQGPTPVCTPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 IDYDFPSLILQKTESISKTNRQTSTKGQVLRKKKKKVSGTLDTPEKTVDSQGPTPVCTPT
              190       200       210       220       230       240

              250       260       270       280       290   
pF1KE0 FLERRKSQVAELNDDDKDDEIVFKQPISCVKEEIQETQTPTHSRKKRRRSSNQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 FLERRKSQVAELNDDDKDDEIVFKQPISCVKEEIQETQTPTHSRKKRRRSSNQ
              250       260       270       280       290   




293 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:51:58 2016 done: Sat Nov  5 02:51:58 2016
 Total Scan time:  2.430 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]