FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0701, 287 aa
  1>>>pF1KE0701 287 - 287 aa - 287 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6375+/- 0.001; mu= 14.1658+/- 0.060
 mean_var=103.3027+/-22.469, 0's: 0 Z-trim(106.3): 95  B-trim: 365 in 1/53
 Lambda= 0.126188
 statistics sampled from 8806 (8909) to 8806 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.274), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS324.1 TRNAU1AP gene_id:54952|Hs108|chr1        ( 287) 1955 366.6 1.2e-101


>>CCDS324.1 TRNAU1AP gene_id:54952|Hs108|chr1             (287 aa)
 initn: 1955 init1: 1955 opt: 1955  Z-score: 1938.3  bits: 366.6 E(32554): 1.2e-101
Smith-Waterman score: 1955; 100.0% identity (100.0% similar) in 287 aa overlap (1-287:1-287)

               10        20        30        40        50        60
pF1KE0 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDA
              190       200       210       220       230       240

              250       260       270       280       
pF1KE0 LEDPMPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIPAMM
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LEDPMPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIPAMM
              250       260       270       280       




287 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:50:49 2016 done: Sat Nov  5 02:50:50 2016
 Total Scan time:  2.320 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]