FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0694, 403 aa
  1>>>pF1KE0694 403 - 403 aa - 403 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.6397+/-0.000397; mu= -1.1528+/- 0.025
 mean_var=282.6763+/-58.717, 0's: 0 Z-trim(121.6): 3  B-trim: 1811 in 1/60
 Lambda= 0.076283
 statistics sampled from 38378 (38383) to 38378 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.45), width:  16
 Scan time:  7.500

The best scores are:                                      opt bits E(85289)
NP_002609 (OMIM: 601789,614883,614885) peroxisome  ( 403) 2683 308.3 2.1e-83


>>NP_002609 (OMIM: 601789,614883,614885) peroxisome biog  (403 aa)
 initn: 2683 init1: 2683 opt: 2683  Z-score: 1618.3  bits: 308.3 E(85289): 2.1e-83
Smith-Waterman score: 2683; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)

               10        20        30        40        50        60
pF1KE0 MASQPPPPPKPWETRRIPGAGPGPGPGPTFQSADLGPTLMTRPGQPALTRVPPPILPRPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MASQPPPPPKPWETRRIPGAGPGPGPGPTFQSADLGPTLMTRPGQPALTRVPPPILPRPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QQTGSSSVNTFRPAYSSFSSGYGAYGNSFYGGYSPYSYGYNGLGYNRLRVDDLPPSRFVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QQTGSSSVNTFRPAYSSFSSGYGAYGNSFYGGYSPYSYGYNGLGYNRLRVDDLPPSRFVQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 AFALVRTIRYLYRRLQRMLGLRRGSENEDLWAESEGTVACLGAEDRAATSAKSWPIFLFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AFALVRTIRYLYRRLQRMLGLRRGSENEDLWAESEGTVACLGAEDRAATSAKSWPIFLFF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 AVILGGPYLIWKLLSTHSDEVTDSINWASGEDDHVVARAEYDFAAVSEEEISFRAGDMLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AVILGGPYLIWKLLSTHSDEVTDSINWASGEDDHVVARAEYDFAAVSEEEISFRAGDMLN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRKGRKTVESSKVSKQQQSFTNPTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRKGRKTVESSKVSKQQQSFTNPTL
              310       320       330       340       350       360

              370       380       390       400   
pF1KE0 TKGATVADSLDEQEAAFESVFVETNKVPVAPDSIGKDGEKQDL
       :::::::::::::::::::::::::::::::::::::::::::
NP_002 TKGATVADSLDEQEAAFESVFVETNKVPVAPDSIGKDGEKQDL
              370       380       390       400   




403 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:49:07 2016 done: Sat Nov  5 02:49:08 2016
 Total Scan time:  7.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]