FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0694, 403 aa
  1>>>pF1KE0694 403 - 403 aa - 403 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8234+/-0.000971; mu= -2.2501+/- 0.059
 mean_var=259.7701+/-52.482, 0's: 0 Z-trim(114.0): 6  B-trim: 0 in 0/55
 Lambda= 0.079576
 statistics sampled from 14574 (14579) to 14574 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.448), width:  16
 Scan time:  3.080

The best scores are:                                      opt bits E(32554)
CCDS1866.1 PEX13 gene_id:5194|Hs108|chr2           ( 403) 2683 320.8 1.4e-87


>>CCDS1866.1 PEX13 gene_id:5194|Hs108|chr2                (403 aa)
 initn: 2683 init1: 2683 opt: 2683  Z-score: 1685.8  bits: 320.8 E(32554): 1.4e-87
Smith-Waterman score: 2683; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)

               10        20        30        40        50        60
pF1KE0 MASQPPPPPKPWETRRIPGAGPGPGPGPTFQSADLGPTLMTRPGQPALTRVPPPILPRPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MASQPPPPPKPWETRRIPGAGPGPGPGPTFQSADLGPTLMTRPGQPALTRVPPPILPRPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QQTGSSSVNTFRPAYSSFSSGYGAYGNSFYGGYSPYSYGYNGLGYNRLRVDDLPPSRFVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 QQTGSSSVNTFRPAYSSFSSGYGAYGNSFYGGYSPYSYGYNGLGYNRLRVDDLPPSRFVQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 AFALVRTIRYLYRRLQRMLGLRRGSENEDLWAESEGTVACLGAEDRAATSAKSWPIFLFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 AFALVRTIRYLYRRLQRMLGLRRGSENEDLWAESEGTVACLGAEDRAATSAKSWPIFLFF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 AVILGGPYLIWKLLSTHSDEVTDSINWASGEDDHVVARAEYDFAAVSEEEISFRAGDMLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 AVILGGPYLIWKLLSTHSDEVTDSINWASGEDDHVVARAEYDFAAVSEEEISFRAGDMLN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRKGRKTVESSKVSKQQQSFTNPTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRKGRKTVESSKVSKQQQSFTNPTL
              310       320       330       340       350       360

              370       380       390       400   
pF1KE0 TKGATVADSLDEQEAAFESVFVETNKVPVAPDSIGKDGEKQDL
       :::::::::::::::::::::::::::::::::::::::::::
CCDS18 TKGATVADSLDEQEAAFESVFVETNKVPVAPDSIGKDGEKQDL
              370       380       390       400   




403 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:49:06 2016 done: Sat Nov  5 02:49:06 2016
 Total Scan time:  3.080 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]