FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0689, 280 aa
  1>>>pF1KE0689 280 - 280 aa - 280 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6031+/-0.00112; mu= 7.7260+/- 0.066
 mean_var=110.5941+/-23.071, 0's: 0 Z-trim(105.7): 171  B-trim: 0 in 0/51
 Lambda= 0.121957
 statistics sampled from 8370 (8589) to 8370 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.264), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS47112.1 DAPP1 gene_id:27071|Hs108|chr4         ( 280) 1895 344.5 4.9e-95
CCDS77945.1 DAPP1 gene_id:27071|Hs108|chr4         ( 263) 1756 320.1 1.1e-87
CCDS47243.1 RASA1 gene_id:5921|Hs108|chr5          ( 870)  312 66.3 8.6e-11
CCDS34200.1 RASA1 gene_id:5921|Hs108|chr5          (1047)  312 66.4   1e-10


>>CCDS47112.1 DAPP1 gene_id:27071|Hs108|chr4              (280 aa)
 initn: 1895 init1: 1895 opt: 1895  Z-score: 1819.6  bits: 344.5 E(32554): 4.9e-95
Smith-Waterman score: 1895; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KE0 MGRAELLEGKMSTQDPSDLWSRSDGEAELLQDLGWYHGNLTRHAAEALLLSNGCDGSYLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MGRAELLEGKMSTQDPSDLWSRSDGEAELLQDLGWYHGNLTRHAAEALLLSNGCDGSYLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RDSNETTGLYSLSVRAKDSVKHFHVEYTGYSFKFGFNEFSSLKDFVKHFANQPLIGSETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RDSNETTGLYSLSVRAKDSVKHFHVEYTGYSFKFGFNEFSSLKDFVKHFANQPLIGSETG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLMVLKHPYPRKVEEPSIYESVRVHTAMQTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TLMVLKHPYPRKVEEPSIYESVRVHTAMQTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 WKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLC
              190       200       210       220       230       240

              250       260       270       280
pF1KE0 AKTGVEADEWIKILRWKLSQIRKQLNQGEGTIRSRSFIFK
       ::::::::::::::::::::::::::::::::::::::::
CCDS47 AKTGVEADEWIKILRWKLSQIRKQLNQGEGTIRSRSFIFK
              250       260       270       280

>>CCDS77945.1 DAPP1 gene_id:27071|Hs108|chr4              (263 aa)
 initn: 1756 init1: 1756 opt: 1756  Z-score: 1687.8  bits: 320.1 E(32554): 1.1e-87
Smith-Waterman score: 1756; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KE0 MGRAELLEGKMSTQDPSDLWSRSDGEAELLQDLGWYHGNLTRHAAEALLLSNGCDGSYLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MGRAELLEGKMSTQDPSDLWSRSDGEAELLQDLGWYHGNLTRHAAEALLLSNGCDGSYLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RDSNETTGLYSLSVRAKDSVKHFHVEYTGYSFKFGFNEFSSLKDFVKHFANQPLIGSETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 RDSNETTGLYSLSVRAKDSVKHFHVEYTGYSFKFGFNEFSSLKDFVKHFANQPLIGSETG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLMVLKHPYPRKVEEPSIYESVRVHTAMQTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TLMVLKHPYPRKVEEPSIYESVRVHTAMQTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 WKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLC
              190       200       210       220       230       240

              250       260       270       280
pF1KE0 AKTGVEADEWIKILRWKLSQIRKQLNQGEGTIRSRSFIFK
       ::::::::::::::::::                      
CCDS77 AKTGVEADEWIKILRWKLVKDKS                 
              250       260                    

>>CCDS47243.1 RASA1 gene_id:5921|Hs108|chr5               (870 aa)
 initn: 250 init1: 135 opt: 312  Z-score: 307.2  bits: 66.3 E(32554): 8.6e-11
Smith-Waterman score: 312; 28.7% identity (61.0% similar) in 254 aa overlap (35-275:174-414)

           10        20        30        40        50        60    
pF1KE0 ELLEGKMSTQDPSDLWSRSDGEAELLQDLGWYHGNLTRHAAEALLLSNGCDGSYLLRDSN
                                     :.::..... :  ::.. :   :.:.: :.
CCDS47 TNLRTDEQGLIVEDLVEEVGREEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSD
           150       160       170       180       190       200   

           70        80         90       100       110       120   
pF1KE0 ETTGLYSLSVRAKDSVKHFHVEYT-GYSFKFGFNEFSSLKDFVKHFANQPLIGSETGTLM
       .: : :::  :.......:..  : . .: .:   ..:. :.. :. .. .. .     .
CCDS47 NTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQIVEG-----Y
           210       220       230       240       250             

           130       140       150         160       170        180
pF1KE0 VLKHPYPRKVEEPSIYESVRVHTAMQTGR--TEDDLVPTAPSLGTKEGYLTKQG-GLVKT
        ::.: : . .:  . ..:  .  ..: :  :.: .  .     .:.::: :.: :  : 
CCDS47 YLKEPVPMQDQEQVLNDTVDGKEIYNTIRRKTKDAFYKNI----VKKGYLLKKGKG--KR
      260       270       280       290           300       310    

              190          200       210        220       230      
pF1KE0 WKTRWFTLHRNE--LKYFK-DQMSPEPIRILDLTECSA-VQFDYSQERVNCFCLVFPFRT
       ::. .: :. ..  : ::. .. . .:  ..::. ::. :  :    : ::: .:    .
CCDS47 WKNLYFILEGSDAQLIYFESEKRATKPKGLIDLSVCSVYVVHDSLFGRPNCFQIVVQHFS
            320       330       340       350       360       370  

             240       250       260       270       280           
pF1KE0 -----FYLCAKTGVEADEWIKILRWKLSQIRKQLNQGEGTIRSRSFIFK           
            ::. ..:  .:..:.: :.  . ..::. . : .. : :                
CCDS47 EEHYIFYFAGETPEQAEDWMKGLQ-AFCNLRKS-SPGTSNKRLRQVSSLVLHIEEAHKLP
            380       390        400        410       420       430

CCDS47 VKHFTNPYCNIYLNSVQVAKTHAREGQNPVWSEEFVFDDLPPDINRFEITLSNKTKKSKD
              440       450       460       470       480       490

>>CCDS34200.1 RASA1 gene_id:5921|Hs108|chr5               (1047 aa)
 initn: 242 init1: 135 opt: 312  Z-score: 306.1  bits: 66.4 E(32554): 1e-10
Smith-Waterman score: 312; 28.7% identity (61.0% similar) in 254 aa overlap (35-275:351-591)

           10        20        30        40        50        60    
pF1KE0 ELLEGKMSTQDPSDLWSRSDGEAELLQDLGWYHGNLTRHAAEALLLSNGCDGSYLLRDSN
                                     :.::..... :  ::.. :   :.:.: :.
CCDS34 TNLRTDEQGLIVEDLVEEVGREEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSD
              330       340       350       360       370       380

           70        80         90       100       110       120   
pF1KE0 ETTGLYSLSVRAKDSVKHFHVEYT-GYSFKFGFNEFSSLKDFVKHFANQPLIGSETGTLM
       .: : :::  :.......:..  : . .: .:   ..:. :.. :. .. .. .     .
CCDS34 NTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQIVEG-----Y
              390       400       410       420       430          

           130       140       150         160       170        180
pF1KE0 VLKHPYPRKVEEPSIYESVRVHTAMQTGR--TEDDLVPTAPSLGTKEGYLTKQG-GLVKT
        ::.: : . .:  . ..:  .  ..: :  :.: .  .     .:.::: :.: :  : 
CCDS34 YLKEPVPMQDQEQVLNDTVDGKEIYNTIRRKTKDAFYKNI----VKKGYLLKKGKG--KR
         440       450       460       470           480           

              190          200       210        220       230      
pF1KE0 WKTRWFTLHRNE--LKYFK-DQMSPEPIRILDLTECSA-VQFDYSQERVNCFCLVFPFRT
       ::. .: :. ..  : ::. .. . .:  ..::. ::. :  :    : ::: .:    .
CCDS34 WKNLYFILEGSDAQLIYFESEKRATKPKGLIDLSVCSVYVVHDSLFGRPNCFQIVVQHFS
     490       500       510       520       530       540         

             240       250       260       270       280           
pF1KE0 -----FYLCAKTGVEADEWIKILRWKLSQIRKQLNQGEGTIRSRSFIFK           
            ::. ..:  .:..:.: :.  . ..::. . : .. : :                
CCDS34 EEHYIFYFAGETPEQAEDWMKGLQ-AFCNLRKS-SPGTSNKRLRQVSSLVLHIEEAHKLP
     550       560       570        580        590       600       

CCDS34 VKHFTNPYCNIYLNSVQVAKTHAREGQNPVWSEEFVFDDLPPDINRFEITLSNKTKKSKD
       610       620       630       640       650       660       




280 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:47:16 2016 done: Sat Nov  5 02:47:16 2016
 Total Scan time:  2.280 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]