Result of FASTA (omim) for
pF1KE0688
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0688, 401 aa
1>>>pF1KE0688 401 - 401 aa - 401 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2387+/-0.000346; mu= 5.0953+/- 0.022
mean_var=200.5886+/-42.141, 0's: 0 Z-trim(120.9): 26 B-trim: 667 in 2/56
Lambda= 0.090557
statistics sampled from 36844 (36870) to 36844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.432), width: 16
Scan time: 9.660
The best scores are: opt bits E(85289)
NP_001139019 (OMIM: 606935) splicing factor 45 [Ho ( 401) 2645 357.8 2.7e-98
NP_116294 (OMIM: 606935) splicing factor 45 [Homo ( 401) 2645 357.8 2.7e-98
XP_016868729 (OMIM: 604819,615583) PREDICTED: poly ( 499) 236 43.1 0.0018
NP_001258029 (OMIM: 604819,615583) poly(U)-binding ( 499) 236 43.1 0.0018
NP_001258026 (OMIM: 604819,615583) poly(U)-binding ( 513) 236 43.1 0.0018
NP_001129505 (OMIM: 604819,615583) poly(U)-binding ( 516) 236 43.1 0.0018
XP_016868728 (OMIM: 604819,615583) PREDICTED: poly ( 516) 236 43.1 0.0018
NP_001258028 (OMIM: 604819,615583) poly(U)-binding ( 530) 236 43.2 0.0019
NP_001258025 (OMIM: 604819,615583) poly(U)-binding ( 541) 236 43.2 0.0019
NP_055096 (OMIM: 604819,615583) poly(U)-binding-sp ( 542) 236 43.2 0.0019
NP_001258027 (OMIM: 604819,615583) poly(U)-binding ( 558) 236 43.2 0.0019
NP_510965 (OMIM: 604819,615583) poly(U)-binding-sp ( 559) 236 43.2 0.0019
XP_016868725 (OMIM: 604819,615583) PREDICTED: poly ( 579) 236 43.2 0.002
XP_011515232 (OMIM: 604819,615583) PREDICTED: poly ( 579) 236 43.2 0.002
XP_016868724 (OMIM: 604819,615583) PREDICTED: poly ( 584) 236 43.2 0.002
XP_016868723 (OMIM: 604819,615583) PREDICTED: poly ( 596) 236 43.2 0.002
XP_016868727 (OMIM: 604819,615583) PREDICTED: poly ( 596) 236 43.2 0.002
XP_016868726 (OMIM: 604819,615583) PREDICTED: poly ( 596) 236 43.2 0.002
XP_011515231 (OMIM: 604819,615583) PREDICTED: poly ( 596) 236 43.2 0.002
>>NP_001139019 (OMIM: 606935) splicing factor 45 [Homo s (401 aa)
initn: 2645 init1: 2645 opt: 2645 Z-score: 1885.6 bits: 357.8 E(85289): 2.7e-98
Smith-Waterman score: 2645; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401)
10 20 30 40 50 60
pF1KE0 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 KIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSDSNPLTEIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSDSNPLTEIL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFE
310 320 330 340 350 360
370 380 390 400
pF1KE0 RVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQV
:::::::::::::::::::::::::::::::::::::::::
NP_001 RVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQV
370 380 390 400
>>NP_116294 (OMIM: 606935) splicing factor 45 [Homo sapi (401 aa)
initn: 2645 init1: 2645 opt: 2645 Z-score: 1885.6 bits: 357.8 E(85289): 2.7e-98
Smith-Waterman score: 2645; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401)
10 20 30 40 50 60
pF1KE0 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 RQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 KIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSDSNPLTEIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 KIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSDSNPLTEIL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFE
310 320 330 340 350 360
370 380 390 400
pF1KE0 RVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQV
:::::::::::::::::::::::::::::::::::::::::
NP_116 RVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQV
370 380 390 400
>>XP_016868729 (OMIM: 604819,615583) PREDICTED: poly(U)- (499 aa)
initn: 239 init1: 124 opt: 236 Z-score: 183.4 bits: 43.1 E(85289): 0.0018
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:398-498)
280 290 300 310 320 330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
: . :..::::: ..:.::: :. :::
XP_016 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
370 380 390 400 410 420
340 350 360 370 380
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
:.: :.. .:. : : .: :.::.:: . . ::. ::::.:.:: : : :
XP_016 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
430 440 450 460 470 480
390 400
pF1KE0 NLDKFRVLDLAEQV
. ..: ::.
XP_016 DQERFDNSDLSA
490
>>NP_001258029 (OMIM: 604819,615583) poly(U)-binding-spl (499 aa)
initn: 239 init1: 124 opt: 236 Z-score: 183.4 bits: 43.1 E(85289): 0.0018
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:398-498)
280 290 300 310 320 330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
: . :..::::: ..:.::: :. :::
NP_001 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
370 380 390 400 410 420
340 350 360 370 380
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
:.: :.. .:. : : .: :.::.:: . . ::. ::::.:.:: : : :
NP_001 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
430 440 450 460 470 480
390 400
pF1KE0 NLDKFRVLDLAEQV
. ..: ::.
NP_001 DQERFDNSDLSA
490
>>NP_001258026 (OMIM: 604819,615583) poly(U)-binding-spl (513 aa)
initn: 239 init1: 124 opt: 236 Z-score: 183.3 bits: 43.1 E(85289): 0.0018
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:412-512)
280 290 300 310 320 330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
: . :..::::: ..:.::: :. :::
NP_001 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
390 400 410 420 430 440
340 350 360 370 380
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
:.: :.. .:. : : .: :.::.:: . . ::. ::::.:.:: : : :
NP_001 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
450 460 470 480 490 500
390 400
pF1KE0 NLDKFRVLDLAEQV
. ..: ::.
NP_001 DQERFDNSDLSA
510
>>NP_001129505 (OMIM: 604819,615583) poly(U)-binding-spl (516 aa)
initn: 239 init1: 124 opt: 236 Z-score: 183.2 bits: 43.1 E(85289): 0.0018
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:415-515)
280 290 300 310 320 330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
: . :..::::: ..:.::: :. :::
NP_001 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
390 400 410 420 430 440
340 350 360 370 380
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
:.: :.. .:. : : .: :.::.:: . . ::. ::::.:.:: : : :
NP_001 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
450 460 470 480 490 500
390 400
pF1KE0 NLDKFRVLDLAEQV
. ..: ::.
NP_001 DQERFDNSDLSA
510
>>XP_016868728 (OMIM: 604819,615583) PREDICTED: poly(U)- (516 aa)
initn: 239 init1: 124 opt: 236 Z-score: 183.2 bits: 43.1 E(85289): 0.0018
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:415-515)
280 290 300 310 320 330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
: . :..::::: ..:.::: :. :::
XP_016 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
390 400 410 420 430 440
340 350 360 370 380
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
:.: :.. .:. : : .: :.::.:: . . ::. ::::.:.:: : : :
XP_016 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
450 460 470 480 490 500
390 400
pF1KE0 NLDKFRVLDLAEQV
. ..: ::.
XP_016 DQERFDNSDLSA
510
>>NP_001258028 (OMIM: 604819,615583) poly(U)-binding-spl (530 aa)
initn: 239 init1: 124 opt: 236 Z-score: 183.1 bits: 43.2 E(85289): 0.0019
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:429-529)
280 290 300 310 320 330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
: . :..::::: ..:.::: :. :::
NP_001 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
400 410 420 430 440 450
340 350 360 370 380
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
:.: :.. .:. : : .: :.::.:: . . ::. ::::.:.:: : : :
NP_001 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
460 470 480 490 500 510
390 400
pF1KE0 NLDKFRVLDLAEQV
. ..: ::.
NP_001 DQERFDNSDLSA
520 530
>>NP_001258025 (OMIM: 604819,615583) poly(U)-binding-spl (541 aa)
initn: 239 init1: 124 opt: 236 Z-score: 183.0 bits: 43.2 E(85289): 0.0019
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:440-540)
280 290 300 310 320 330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
: . :..::::: ..:.::: :. :::
NP_001 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
410 420 430 440 450 460
340 350 360 370 380
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
:.: :.. .:. : : .: :.::.:: . . ::. ::::.:.:: : : :
NP_001 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
470 480 490 500 510 520
390 400
pF1KE0 NLDKFRVLDLAEQV
. ..: ::.
NP_001 DQERFDNSDLSA
530 540
>>NP_055096 (OMIM: 604819,615583) poly(U)-binding-splici (542 aa)
initn: 239 init1: 124 opt: 236 Z-score: 183.0 bits: 43.2 E(85289): 0.0019
Smith-Waterman score: 236; 41.6% identity (65.3% similar) in 101 aa overlap (301-398:441-541)
280 290 300 310 320 330
pF1KE0 SKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEEC
: . :..::::: ..:.::: :. :::
NP_055 SERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEEC
420 430 440 450 460 470
340 350 360 370 380
pF1KE0 EKYGKVGKCVIF-EIPGAPDDEA--VRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY
:.: :.. .:. : : .: :.::.:: . . ::. ::::.:.:: : : :
NP_055 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY
480 490 500 510 520 530
390 400
pF1KE0 NLDKFRVLDLAEQV
. ..: ::.
NP_055 DQERFDNSDLSA
540
401 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:46:42 2016 done: Sat Nov 5 02:46:44 2016
Total Scan time: 9.660 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]