FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0688, 401 aa
  1>>>pF1KE0688 401 - 401 aa - 401 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3199+/-0.000836; mu= 4.5461+/- 0.050
 mean_var=184.4982+/-37.170, 0's: 0 Z-trim(113.3): 27  B-trim: 10 in 1/52
 Lambda= 0.094423
 statistics sampled from 13969 (13988) to 13969 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.43), width:  16
 Scan time:  3.270

The best scores are:                                      opt bits E(32554)
CCDS7077.1 RBM17 gene_id:84991|Hs108|chr10         ( 401) 2645 372.2 4.6e-103


>>CCDS7077.1 RBM17 gene_id:84991|Hs108|chr10              (401 aa)
 initn: 2645 init1: 2645 opt: 2645  Z-score: 1963.8  bits: 372.2 E(32554): 4.6e-103
Smith-Waterman score: 2645; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401)

               10        20        30        40        50        60
pF1KE0 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 RQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSDSNPLTEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 KIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSDSNPLTEIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFE
              310       320       330       340       350       360

              370       380       390       400 
pF1KE0 RVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQV
       :::::::::::::::::::::::::::::::::::::::::
CCDS70 RVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQV
              370       380       390       400 




401 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:46:42 2016 done: Sat Nov  5 02:46:42 2016
 Total Scan time:  3.270 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]