Result of FASTA (omim) for
pF1KE0669
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0669, 249 aa
1>>>pF1KE0669 249 - 249 aa - 249 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.4970+/-0.000366; mu= -11.3638+/- 0.023
mean_var=424.0495+/-85.886, 0's: 0 Z-trim(125.5): 17 B-trim: 0 in 0/62
Lambda= 0.062282
statistics sampled from 49470 (49487) to 49470 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.836), E-opt: 0.2 (0.58), width: 16
Scan time: 7.210
The best scores are: opt bits E(85289)
XP_006719320 (OMIM: 614239) PREDICTED: sesquipedal ( 249) 1724 167.8 1.7e-41
NP_653272 (OMIM: 614239) sesquipedalian-1 isoform ( 249) 1724 167.8 1.7e-41
NP_001171468 (OMIM: 614239) sesquipedalian-1 isofo ( 249) 1724 167.8 1.7e-41
XP_011536278 (OMIM: 614239) PREDICTED: sesquipedal ( 249) 1724 167.8 1.7e-41
XP_016874372 (OMIM: 614239) PREDICTED: sesquipedal ( 249) 1724 167.8 1.7e-41
NP_001171467 (OMIM: 614239) sesquipedalian-1 isofo ( 262) 1724 167.8 1.7e-41
XP_005261430 (OMIM: 614240) PREDICTED: sesquipedal ( 259) 482 56.2 6.7e-08
NP_001002034 (OMIM: 614240) sesquipedalian-2 [Homo ( 259) 482 56.2 6.7e-08
>>XP_006719320 (OMIM: 614239) PREDICTED: sesquipedalian- (249 aa)
initn: 1724 init1: 1724 opt: 1724 Z-score: 866.2 bits: 167.8 E(85289): 1.7e-41
Smith-Waterman score: 1724; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)
10 20 30 40 50 60
pF1KE0 MKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLFYFEDAASREPVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLFYFEDAASREPVGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRASFDYLRLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRASFDYLRLVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARLHECYGQEIRALRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARLHECYGQEIRALRG
190 200 210 220 230 240
pF1KE0 QWLSSRVQP
:::::::::
XP_006 QWLSSRVQP
>>NP_653272 (OMIM: 614239) sesquipedalian-1 isoform 2 [H (249 aa)
initn: 1724 init1: 1724 opt: 1724 Z-score: 866.2 bits: 167.8 E(85289): 1.7e-41
Smith-Waterman score: 1724; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)
10 20 30 40 50 60
pF1KE0 MKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLFYFEDAASREPVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 MKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLFYFEDAASREPVGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRASFDYLRLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 IILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRASFDYLRLVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 RELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARLHECYGQEIRALRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 LPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARLHECYGQEIRALRG
190 200 210 220 230 240
pF1KE0 QWLSSRVQP
:::::::::
NP_653 QWLSSRVQP
>>NP_001171468 (OMIM: 614239) sesquipedalian-1 isoform 2 (249 aa)
initn: 1724 init1: 1724 opt: 1724 Z-score: 866.2 bits: 167.8 E(85289): 1.7e-41
Smith-Waterman score: 1724; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)
10 20 30 40 50 60
pF1KE0 MKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLFYFEDAASREPVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLFYFEDAASREPVGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRASFDYLRLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRASFDYLRLVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARLHECYGQEIRALRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARLHECYGQEIRALRG
190 200 210 220 230 240
pF1KE0 QWLSSRVQP
:::::::::
NP_001 QWLSSRVQP
>>XP_011536278 (OMIM: 614239) PREDICTED: sesquipedalian- (249 aa)
initn: 1724 init1: 1724 opt: 1724 Z-score: 866.2 bits: 167.8 E(85289): 1.7e-41
Smith-Waterman score: 1724; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)
10 20 30 40 50 60
pF1KE0 MKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLFYFEDAASREPVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLFYFEDAASREPVGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRASFDYLRLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRASFDYLRLVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARLHECYGQEIRALRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARLHECYGQEIRALRG
190 200 210 220 230 240
pF1KE0 QWLSSRVQP
:::::::::
XP_011 QWLSSRVQP
>>XP_016874372 (OMIM: 614239) PREDICTED: sesquipedalian- (249 aa)
initn: 1724 init1: 1724 opt: 1724 Z-score: 866.2 bits: 167.8 E(85289): 1.7e-41
Smith-Waterman score: 1724; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)
10 20 30 40 50 60
pF1KE0 MKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLFYFEDAASREPVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLFYFEDAASREPVGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRASFDYLRLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRASFDYLRLVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARLHECYGQEIRALRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARLHECYGQEIRALRG
190 200 210 220 230 240
pF1KE0 QWLSSRVQP
:::::::::
XP_016 QWLSSRVQP
>>NP_001171467 (OMIM: 614239) sesquipedalian-1 isoform 1 (262 aa)
initn: 1724 init1: 1724 opt: 1724 Z-score: 865.9 bits: 167.8 E(85289): 1.7e-41
Smith-Waterman score: 1724; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:14-262)
10 20 30 40
pF1KE0 MKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLF
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPGSPPGPAIATMKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 YFEDAASREPVGVIILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFEDAASREPVGVIILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 LSRASFDYLRLVVRELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSRASFDYLRLVVRELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPA
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 PVPALPLPRRPSALPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVPALPLPRRPSALPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARL
190 200 210 220 230 240
230 240
pF1KE0 HECYGQEIRALRGQWLSSRVQP
::::::::::::::::::::::
NP_001 HECYGQEIRALRGQWLSSRVQP
250 260
>>XP_005261430 (OMIM: 614240) PREDICTED: sesquipedalian- (259 aa)
initn: 522 init1: 211 opt: 482 Z-score: 262.8 bits: 56.2 E(85289): 6.7e-08
Smith-Waterman score: 484; 41.1% identity (61.2% similar) in 263 aa overlap (1-248:1-247)
10 20 30 40 50
pF1KE0 MKLNERSLAFYATCDAPVDNAGFLYKKGG-----RHAAYHRR-WFVLRGNMLFYFEDAAS
:::::::.: :: :.:.:. ::: :: .. :: ::::.::.:: ::. .
XP_005 MKLNERSVAHYALSDSPADHMGFLRTWGGPGTPPTPSGTGRRCWFVLKGNLLFSFESREG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 REPVGVIILEGCTVELVEAA--EEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRAS
: :.....::::::::.:: ::::::. : . .: ..::::. :.:.:::.:::::
XP_005 RAPLSLVVLEGCTVELAEAPVPEEFAFAICFDAPGVRPHLLAAEGPAAQEAWVKVLSRAS
70 80 90 100 110 120
120 130 140 150 160
pF1KE0 FDYLRLVVRELEQQLAAVRGGGGMALPQPQP-QSL-----PLPPSLPSA-LAPVPSLPSA
: :.::::::::.:: .: . .:: . . .:. : :. .: : : .
XP_005 FGYMRLVVRELESQLQDARQS--LALQRRSSWKSVASRCKPQAPNHRAAGLENGHCLSKD
130 140 150 160 170
170 180 190 200 210 220
pF1KE0 PAPVPALPLPRRPSALPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFA
.:: . :: : : : .. : ....: .: . . :.
XP_005 SSPVGLVEEAGSRSA----GWGLAEWELQG--------PASLLLGKGQSPVSP-ETSCFS
180 190 200 210 220
230 240
pF1KE0 RLHECYGQEIRALRGQWLSSRVQP
::. ::::: :: : ..:.:
XP_005 TLHDWYGQEIVELRQCW-QKRAQGSHSKCEEQDRP
230 240 250
>>NP_001002034 (OMIM: 614240) sesquipedalian-2 [Homo sap (259 aa)
initn: 522 init1: 211 opt: 482 Z-score: 262.8 bits: 56.2 E(85289): 6.7e-08
Smith-Waterman score: 484; 41.1% identity (61.2% similar) in 263 aa overlap (1-248:1-247)
10 20 30 40 50
pF1KE0 MKLNERSLAFYATCDAPVDNAGFLYKKGG-----RHAAYHRR-WFVLRGNMLFYFEDAAS
:::::::.: :: :.:.:. ::: :: .. :: ::::.::.:: ::. .
NP_001 MKLNERSVAHYALSDSPADHMGFLRTWGGPGTPPTPSGTGRRCWFVLKGNLLFSFESREG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 REPVGVIILEGCTVELVEAA--EEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRAS
: :.....::::::::.:: ::::::. : . .: ..::::. :.:.:::.:::::
NP_001 RAPLSLVVLEGCTVELAEAPVPEEFAFAICFDAPGVRPHLLAAEGPAAQEAWVKVLSRAS
70 80 90 100 110 120
120 130 140 150 160
pF1KE0 FDYLRLVVRELEQQLAAVRGGGGMALPQPQP-QSL-----PLPPSLPSA-LAPVPSLPSA
: :.::::::::.:: .: . .:: . . .:. : :. .: : : .
NP_001 FGYMRLVVRELESQLQDARQS--LALQRRSSWKSVASRCKPQAPNHRAAGLENGHCLSKD
130 140 150 160 170
170 180 190 200 210 220
pF1KE0 PAPVPALPLPRRPSALPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFA
.:: . :: : : : .. : ....: .: . . :.
NP_001 SSPVGLVEEAGSRSA----GWGLAEWELQG--------PASLLLGKGQSPVSP-ETSCFS
180 190 200 210 220
230 240
pF1KE0 RLHECYGQEIRALRGQWLSSRVQP
::. ::::: :: : ..:.:
NP_001 TLHDWYGQEIVELRQCW-QKRAQGSHSKCEEQDRP
230 240 250
249 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:11:59 2016 done: Wed Nov 2 18:12:00 2016
Total Scan time: 7.210 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]