FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0669, 249 aa
  1>>>pF1KE0669 249 - 249 aa - 249 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.0594+/-0.00093; mu= -8.6255+/- 0.056
 mean_var=372.7647+/-76.706, 0's: 0 Z-trim(117.5): 9  B-trim: 478 in 1/53
 Lambda= 0.066429
 statistics sampled from 18241 (18248) to 18241 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.561), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS9152.1 FAM109A gene_id:144717|Hs108|chr12      ( 249) 1724 177.8 6.1e-45
CCDS53833.1 FAM109A gene_id:144717|Hs108|chr12     ( 262) 1724 177.8 6.3e-45


>>CCDS9152.1 FAM109A gene_id:144717|Hs108|chr12           (249 aa)
 initn: 1724 init1: 1724 opt: 1724  Z-score: 920.3  bits: 177.8 E(32554): 6.1e-45
Smith-Waterman score: 1724; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)

               10        20        30        40        50        60
pF1KE0 MKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLFYFEDAASREPVGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLFYFEDAASREPVGV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 IILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRASFDYLRLVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 IILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRASFDYLRLVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 RELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARLHECYGQEIRALRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARLHECYGQEIRALRG
              190       200       210       220       230       240

                
pF1KE0 QWLSSRVQP
       :::::::::
CCDS91 QWLSSRVQP
                

>>CCDS53833.1 FAM109A gene_id:144717|Hs108|chr12          (262 aa)
 initn: 1724 init1: 1724 opt: 1724  Z-score: 920.0  bits: 177.8 E(32554): 6.3e-45
Smith-Waterman score: 1724; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:14-262)

                            10        20        30        40       
pF1KE0              MKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLF
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAPGSPPGPAIATMKLNERSLAFYATCDAPVDNAGFLYKKGGRHAAYHRRWFVLRGNMLF
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KE0 YFEDAASREPVGVIILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YFEDAASREPVGVIILEGCTVELVEAAEEFAFAVRFAGTRARTYVLAAESQDAMEGWVKA
               70        80        90       100       110       120

       110       120       130       140       150       160       
pF1KE0 LSRASFDYLRLVVRELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LSRASFDYLRLVVRELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPA
              130       140       150       160       170       180

       170       180       190       200       210       220       
pF1KE0 PVPALPLPRRPSALPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PVPALPLPRRPSALPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARL
              190       200       210       220       230       240

       230       240         
pF1KE0 HECYGQEIRALRGQWLSSRVQP
       ::::::::::::::::::::::
CCDS53 HECYGQEIRALRGQWLSSRVQP
              250       260  




249 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:11:58 2016 done: Wed Nov  2 18:11:59 2016
 Total Scan time:  2.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]