Result of FASTA (ccds) for
pF1KE0667
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0667, 243 aa
1>>>pF1KE0667 243 - 243 aa - 243 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4672+/-0.000595; mu= 9.6747+/- 0.036
mean_var=98.1739+/-19.822, 0's: 0 Z-trim(114.4): 16 B-trim: 0 in 0/53
Lambda= 0.129442
statistics sampled from 14944 (14960) to 14944 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.46), width: 16
Scan time: 2.420
The best scores are: opt bits E(32554)
CCDS59023.1 RCAN2 gene_id:10231|Hs108|chr6 ( 243) 1679 322.9 1.2e-88
CCDS43469.1 RCAN2 gene_id:10231|Hs108|chr6 ( 197) 1189 231.4 3.5e-61
CCDS254.1 RCAN3 gene_id:11123|Hs108|chr1 ( 241) 942 185.3 3.2e-47
CCDS13637.1 RCAN1 gene_id:1827|Hs108|chr21 ( 252) 808 160.3 1.1e-39
CCDS33551.1 RCAN1 gene_id:1827|Hs108|chr21 ( 197) 805 159.6 1.4e-39
CCDS74788.1 RCAN1 gene_id:1827|Hs108|chr21 ( 277) 764 152.1 3.7e-37
CCDS74790.1 RCAN1 gene_id:1827|Hs108|chr21 ( 171) 754 150.1 8.9e-37
CCDS82668.1 RCAN1 gene_id:1827|Hs108|chr21 ( 205) 619 124.9 4e-29
CCDS42921.1 RCAN1 gene_id:1827|Hs108|chr21 ( 117) 516 105.6 1.6e-23
CCDS57981.1 RCAN3 gene_id:11123|Hs108|chr1 ( 183) 509 104.4 5.6e-23
CCDS72730.1 RCAN3 gene_id:11123|Hs108|chr1 ( 116) 500 102.6 1.2e-22
CCDS57979.1 RCAN3 gene_id:11123|Hs108|chr1 ( 231) 455 94.3 7.4e-20
CCDS57980.1 RCAN3 gene_id:11123|Hs108|chr1 ( 173) 443 92.0 2.7e-19
>>CCDS59023.1 RCAN2 gene_id:10231|Hs108|chr6 (243 aa)
initn: 1679 init1: 1679 opt: 1679 Z-score: 1705.0 bits: 322.9 E(32554): 1.2e-88
Smith-Waterman score: 1679; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KE0 MRGESYFIGMRSPGQQGHVPEDGGLFLLCCIDRDWAVTRCFAEEAFQAITDFNDLPNSLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MRGESYFIGMRSPGQQGHVPEDGGLFLLCCIDRDWAVTRCFAEEAFQAITDFNDLPNSLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ACNVHQSVFEGEESKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ACNVHQSVFEGEESKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHET
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QFRGKKLKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QFRGKKLKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRPGLPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRPGLPPS
190 200 210 220 230 240
pF1KE0 VSN
:::
CCDS59 VSN
>>CCDS43469.1 RCAN2 gene_id:10231|Hs108|chr6 (197 aa)
initn: 1189 init1: 1189 opt: 1189 Z-score: 1211.8 bits: 231.4 E(32554): 3.5e-61
Smith-Waterman score: 1189; 94.1% identity (96.3% similar) in 187 aa overlap (57-243:11-197)
30 40 50 60 70 80
pF1KE0 LLCCIDRDWAVTRCFAEEAFQAITDFNDLPNSLFACNVHQSVFEGEESKEKFEGLFRTYD
..: :: : :: ..: ::::::::::::
CCDS43 MPAPSMDCDVSTLVACVVDVEVFTNQEVKEKFEGLFRTYD
10 20 30 40
90 100 110 120 130 140
pF1KE0 DCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKKLKLYFAQVQTPETDGDKLHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKKLKLYFAQVQTPETDGDKLHL
50 60 70 80 90 100
150 160 170 180 190 200
pF1KE0 APPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 APPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSV
110 120 130 140 150 160
210 220 230 240
pF1KE0 VVHVCDSDIEEEEDPKTSPKPKIIQTRRPGLPPSVSN
:::::::::::::::::::::::::::::::::::::
CCDS43 VVHVCDSDIEEEEDPKTSPKPKIIQTRRPGLPPSVSN
170 180 190
>>CCDS254.1 RCAN3 gene_id:11123|Hs108|chr1 (241 aa)
initn: 856 init1: 856 opt: 942 Z-score: 961.2 bits: 185.3 E(32554): 3.2e-47
Smith-Waterman score: 942; 66.4% identity (83.4% similar) in 217 aa overlap (28-242:16-230)
10 20 30 40 50
pF1KE0 MRGESYFIGMRSPGQQGHVPEDGGLFLLCCIDRDWAVTRCFAE--EAFQAITDFNDLPNS
:: :.. :.: . .. . :..:::.:
CCDS25 MLRDTMKSWNDSQSDLCSTDQEEEEEMIFGENEDDLDEMMDLSDLPTS
10 20 30 40
60 70 80 90 100 110
pF1KE0 LFACNVHQSVFEGEESKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELH
::::.::..:::..:.::.::.:: ::: :::::::::::::::::.:..:::::::::
CCDS25 LFACSVHEAVFEAREQKERFEALFTIYDDQVTFQLFKSFRRVRINFSKPEAAARARIELH
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 ETQFRGKKLKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLN
::.: :.:::::::::: :: .: ::::.::::::::.::::::. .:: ::.:
CCDS25 ETDFNGQKLKLYFAQVQMSGEVRDKSYLLPPQPVKQFLISPPASPPVGWKQSEDAMPVIN
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE0 YDLLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRPGLP
:::: ::.:::::::::::::::::::::::::.:. ::::. : .:: :: ::::: :
CCDS25 YDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEEETK-NPKQKIAQTRRPD-P
170 180 190 200 210 220
240
pF1KE0 PSVSN
:...
CCDS25 PTAALNEPQTFDCAL
230 240
>>CCDS13637.1 RCAN1 gene_id:1827|Hs108|chr21 (252 aa)
initn: 464 init1: 437 opt: 808 Z-score: 825.7 bits: 160.3 E(32554): 1.1e-39
Smith-Waterman score: 829; 60.0% identity (77.6% similar) in 210 aa overlap (34-239:48-248)
10 20 30 40 50 60
pF1KE0 ESYFIGMRSPGQQGHVPEDGGLFLLCCIDRDWAVTRCFAEEAFQAITDFNDLPNSLFACN
::. : ::. :..:::.. .::.
CCDS13 EAAEARARPGVTLRPFAPLSGAAEADEGGGDWSFIDCEMEEV-----DLQDLPSATIACH
20 30 40 50 60 70
70 80 90 100 110 120
pF1KE0 VHQSVFEGEESKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFR
. :: . :::.:::::: .::: ::::.::::::::: ::: ::..::.:.:
CCDS13 LDPRVFVDGLCRAKFESLFRTYDKDITFQYFKSFKRVRINFSNPFSAADARLQLHKTEFL
80 90 100 110 120 130
130 140 150 160 170 180
pF1KE0 GKKLKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLY
::..::::::. .. :::::.: ::::::::.::::::. ..:::::.::::::
CCDS13 GKEMKLYFAQTLHIGSS----HLAPPNPDKQFLISPPASPPVGWKQVEDATPVINYDLLY
140 150 160 170 180
190 200 210 220 230
pF1KE0 AVAKLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTS----PKPKIIQTRRPGLPP
:..::::::::::::.:..:::::::::.:: :.::. . ::::::::::: :
CCDS13 AISKLGPGEKYELHAATDTTPSVVVHVCESDQEKEEEEEMERMRRPKPKIIQTRRPEYTP
190 200 210 220 230 240
240
pF1KE0 SVSN
CCDS13 IHLS
250
>>CCDS33551.1 RCAN1 gene_id:1827|Hs108|chr21 (197 aa)
initn: 437 init1: 437 opt: 805 Z-score: 824.3 bits: 159.6 E(32554): 1.4e-39
Smith-Waterman score: 805; 62.7% identity (81.9% similar) in 193 aa overlap (51-239:5-193)
30 40 50 60 70 80
pF1KE0 EDGGLFLLCCIDRDWAVTRCFAEEAFQAITDFNDLPNSLFACNVHQSVFEGEESKEKFEG
.:: .::.:: .....: :.. :::.
CCDS33 MHFRNFNYSFSSLIACVANSDIFSESETRAKFES
10 20 30
90 100 110 120 130 140
pF1KE0 LFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKKLKLYFAQVQTPETD
:::::: .::: ::::.::::::::: ::: ::..::.:.: ::..::::::. ..
CCDS33 LFRTYDKDITFQYFKSFKRVRINFSNPFSAADARLQLHKTEFLGKEMKLYFAQTLHIGSS
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE0 GDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGT
:::::.: ::::::::.::::::. ..:::::.:::::::..::::::::::::.:
CCDS33 ----HLAPPNPDKQFLISPPASPPVGWKQVEDATPVINYDLLYAISKLGPGEKYELHAAT
100 110 120 130 140 150
210 220 230 240
pF1KE0 ESTPSVVVHVCDSDIEEEEDPKTS----PKPKIIQTRRPGLPPSVSN
..:::::::::.:: :.::. . ::::::::::: :
CCDS33 DTTPSVVVHVCESDQEKEEEEEMERMRRPKPKIIQTRRPEYTPIHLS
160 170 180 190
>>CCDS74788.1 RCAN1 gene_id:1827|Hs108|chr21 (277 aa)
initn: 454 init1: 437 opt: 764 Z-score: 780.7 bits: 152.1 E(32554): 3.7e-37
Smith-Waterman score: 764; 67.6% identity (83.5% similar) in 170 aa overlap (74-239:108-273)
50 60 70 80 90 100
pF1KE0 EAFQAITDFNDLPNSLFACNVHQSVFEGEESKEKFEGLFRTYDDCVTFQLFKSFRRVRIN
:: :::.:::::: .::: ::::.:::::
CCDS74 LLAVNIPEDTLLSYPESSLPLQRHCAFHRFSKAKFESLFRTYDKDITFQYFKSFKRVRIN
80 90 100 110 120 130
110 120 130 140 150 160
pF1KE0 FSNPKSAARARIELHETQFRGKKLKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSP
:::: ::: ::..::.:.: ::..::::::. .. :::::.: ::::::::.::
CCDS74 FSNPFSAADARLQLHKTEFLGKEMKLYFAQTLHIGSS----HLAPPNPDKQFLISPPASP
140 150 160 170 180 190
170 180 190 200 210 220
pF1KE0 PVGWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKT
::::. ..:::::.:::::::..::::::::::::.:..:::::::::.:: :.::. .
CCDS74 PVGWKQVEDATPVINYDLLYAISKLGPGEKYELHAATDTTPSVVVHVCESDQEKEEEEEM
200 210 220 230 240 250
230 240
pF1KE0 S----PKPKIIQTRRPGLPPSVSN
::::::::::: :
CCDS74 ERMRRPKPKIIQTRRPEYTPIHLS
260 270
>>CCDS74790.1 RCAN1 gene_id:1827|Hs108|chr21 (171 aa)
initn: 437 init1: 437 opt: 754 Z-score: 773.7 bits: 150.1 E(32554): 8.9e-37
Smith-Waterman score: 754; 67.7% identity (83.8% similar) in 167 aa overlap (77-239:5-167)
50 60 70 80 90 100
pF1KE0 QAITDFNDLPNSLFACNVHQSVFEGEESKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSN
:::.:::::: .::: ::::.::::::::
CCDS74 MVYAKFESLFRTYDKDITFQYFKSFKRVRINFSN
10 20 30
110 120 130 140 150 160
pF1KE0 PKSAARARIELHETQFRGKKLKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVG
: ::: ::..::.:.: ::..::::::. .. :::::.: ::::::::.:::::
CCDS74 PFSAADARLQLHKTEFLGKEMKLYFAQTLHIGSS----HLAPPNPDKQFLISPPASPPVG
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE0 WQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTS--
:. ..:::::.:::::::..::::::::::::.:..:::::::::.:: :.::. .
CCDS74 WKQVEDATPVINYDLLYAISKLGPGEKYELHAATDTTPSVVVHVCESDQEKEEEEEMERM
100 110 120 130 140 150
230 240
pF1KE0 --PKPKIIQTRRPGLPPSVSN
::::::::::: :
CCDS74 RRPKPKIIQTRRPEYTPIHLS
160 170
>>CCDS82668.1 RCAN1 gene_id:1827|Hs108|chr21 (205 aa)
initn: 611 init1: 331 opt: 619 Z-score: 636.3 bits: 124.9 E(32554): 4e-29
Smith-Waterman score: 619; 53.1% identity (78.0% similar) in 177 aa overlap (51-227:5-174)
30 40 50 60 70 80
pF1KE0 EDGGLFLLCCIDRDWAVTRCFAEEAFQAITDFNDLPNSLFACNVHQSVFEGEESKEKFEG
.:: .::.:: .....: :.. :::.
CCDS82 MHFRNFNYSFSSLIACVANSDIFSESETRAKFES
10 20 30
90 100 110 120 130 140
pF1KE0 LFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKKLKLYFAQVQTPETD
:::::: .::: ::::.::::::::: ::: ::..::.:.: ::..::::::. ..
CCDS82 LFRTYDKDITFQYFKSFKRVRINFSNPFSAADARLQLHKTEFLGKEMKLYFAQTLHIGSS
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE0 GDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGT
:::::.: ::::::::.::::::. ..:::::.:::::::..::::::. .:
CCDS82 ----HLAPPNPDKQFLISPPASPPVGWKQVEDATPVINYDLLYAISKLGPGEQGPRVGGR
100 110 120 130 140 150
210 220 230 240
pF1KE0 ESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRPGLPPSVSN
.. ... : . . .. :..::.:
CCDS82 QGETQLL--PCTRE-QYHHYPRSSPEPMPACFVSFSVFFCATVPCAGSMPASWHHLQC
160 170 180 190 200
>>CCDS42921.1 RCAN1 gene_id:1827|Hs108|chr21 (117 aa)
initn: 452 init1: 437 opt: 516 Z-score: 536.0 bits: 105.6 E(32554): 1.6e-23
Smith-Waterman score: 516; 65.8% identity (82.1% similar) in 117 aa overlap (127-239:1-113)
100 110 120 130 140 150
pF1KE0 FRRVRINFSNPKSAARARIELHETQFRGKKLKLYFAQVQTPETDGDKLHLAPPQPAKQFL
.::::::. .. :::::.: ::::
CCDS42 MKLYFAQTLHIGSS----HLAPPNPDKQFL
10 20
160 170 180 190 200 210
pF1KE0 ISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSDIE
::::.::::::. ..:::::.:::::::..::::::::::::.:..:::::::::.:: :
CCDS42 ISPPASPPVGWKQVEDATPVINYDLLYAISKLGPGEKYELHAATDTTPSVVVHVCESDQE
30 40 50 60 70 80
220 230 240
pF1KE0 EEEDPKTS----PKPKIIQTRRPGLPPSVSN
.::. . ::::::::::: :
CCDS42 KEEEEEMERMRRPKPKIIQTRRPEYTPIHLS
90 100 110
>>CCDS57981.1 RCAN3 gene_id:11123|Hs108|chr1 (183 aa)
initn: 544 init1: 440 opt: 509 Z-score: 526.0 bits: 104.4 E(32554): 5.6e-23
Smith-Waterman score: 518; 44.7% identity (59.4% similar) in 217 aa overlap (28-242:16-172)
10 20 30 40 50
pF1KE0 MRGESYFIGMRSPGQQGHVPEDGGLFLLCCIDRDWAVTRCFAE--EAFQAITDFNDLPNS
:: :.. :.: . .. . :..:::.:
CCDS57 MLRDTMKSWNDSQSDLCSTDQEEEEEMIFGENEDDLDEMMDLSDLPTS
10 20 30 40
60 70 80 90 100 110
pF1KE0 LFACNVHQSVFEGEESKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELH
::::.::..:::..:.: .. : :
CCDS57 LFACSVHEAVFEAREQKVQMSGEVR-----------------------------------
50 60 70
120 130 140 150 160 170
pF1KE0 ETQFRGKKLKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLN
:: .: ::::.::::::::.::::::. .:: ::.:
CCDS57 -----------------------DKSYLLPPQPVKQFLISPPASPPVGWKQSEDAMPVIN
80 90 100 110
180 190 200 210 220 230
pF1KE0 YDLLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRPGLP
:::: ::.:::::::::::::::::::::::::.:. ::::. : .:: :: ::::: :
CCDS57 YDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEEETK-NPKQKIAQTRRPD-P
120 130 140 150 160
240
pF1KE0 PSVSN
:...
CCDS57 PTAALNEPQTFDCAL
170 180
243 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:17:02 2016 done: Wed Nov 2 18:17:03 2016
Total Scan time: 2.420 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]