Result of FASTA (ccds) for
pF1KE0666
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0666, 357 aa
1>>>pF1KE0666 357 - 357 aa - 357 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7393+/-0.000965; mu= 3.6532+/- 0.058
mean_var=315.5497+/-64.557, 0's: 0 Z-trim(114.8): 39 B-trim: 12 in 1/51
Lambda= 0.072201
statistics sampled from 15342 (15375) to 15342 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.472), width: 16
Scan time: 2.230
The best scores are: opt bits E(32554)
CCDS41870.1 PSPC1 gene_id:55269|Hs108|chr13 ( 523) 2336 256.7 3.3e-68
CCDS14410.1 NONO gene_id:4841|Hs108|chrX ( 471) 1655 185.7 7e-47
CCDS388.1 SFPQ gene_id:6421|Hs108|chr1 ( 707) 1638 184.1 3.1e-46
CCDS55445.1 NONO gene_id:4841|Hs108|chrX ( 382) 1427 161.8 8.6e-40
>>CCDS41870.1 PSPC1 gene_id:55269|Hs108|chr13 (523 aa)
initn: 2478 init1: 2336 opt: 2336 Z-score: 1338.0 bits: 256.7 E(32554): 3.3e-68
Smith-Waterman score: 2336; 99.2% identity (99.7% similar) in 353 aa overlap (1-353:37-389)
10 20 30
pF1KE0 MALALAGEPAPPAPAPPEDHPDEEMGFTID
::::::::::::::::::::::::::::::
CCDS41 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
310 320 330 340 350 360
340 350
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG
:::::::::::::::::::: ..
CCDS41 REQEELRRQQEGFKPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNM
370 380 390 400 410 420
>>CCDS14410.1 NONO gene_id:4841|Hs108|chrX (471 aa)
initn: 1971 init1: 1594 opt: 1655 Z-score: 955.2 bits: 185.7 E(32554): 7e-47
Smith-Waterman score: 1655; 71.1% identity (90.9% similar) in 339 aa overlap (9-347:37-374)
10 20 30
pF1KE0 MALALAGEPAPPAPAPPEDHPDEEMGFTIDIKSFLKPG
: :: :: .. ... :.:::.:.: :::
CCDS14 FNLEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIPANGQQASSQNEGLTIDLKNFRKPG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAK
:::.::: :::::::: :::::....:::.::. .::::..:.::::::::.::::::::
CCDS14 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAK
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 AELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGR
.:::. :... ::.::: :.:.:::.:: :::::::.::: :: ::.:::.::::::
CCDS14 VELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGR
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQ
.:::.:::..:: :::::.::..:.::::: :::: ::::.:.:::.::::::. :.::
CCDS14 PSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 YHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHE
.::::::::::::::.::.::: ::::: ::::::..::::::.::.:::: ::::::::
CCDS14 FHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEMEAARHE
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE0 HQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRHREQEELRR
::.::::::::::::::::.:::.:::.:::::..::.:::.::::::: :....: .::
CCDS14 HQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEM-RRQQEEMMRR
310 320 330 340 350 360
340 350
pF1KE0 QQEGFKPNYMENGDKRKCG
:::::: ..
CCDS14 QQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATMMPDGTL
370 380 390 400 410 420
>>CCDS388.1 SFPQ gene_id:6421|Hs108|chr1 (707 aa)
initn: 1776 init1: 1582 opt: 1638 Z-score: 943.6 bits: 184.1 E(32554): 3.1e-46
Smith-Waterman score: 1638; 71.7% identity (91.4% similar) in 336 aa overlap (9-341:259-594)
10 20 30
pF1KE0 MALALAGEPAPPAPAP-PEDHPDEEMGFTIDIKSFLKP
: : .:. :.. .. :: ... . .:
CCDS38 GHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRP
230 240 250 260 270 280
40 50 60 70 80 90
pF1KE0 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIA
:::::::::::::::::.::::..::::: .::::.:::::. .:::::.::::.:::::
CCDS38 GEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIA
290 300 310 320 330 340
100 110 120 130 140 150
pF1KE0 KAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRG
::::: : ...: ::.:::::.:::.:.:::: :::::::.:::::::.:.:::.:::::
CCDS38 KAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRG
350 360 370 380 390 400
160 170 180 190 200 210
pF1KE0 RATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQ
:.::::.::::.:: ::::.:::..:.::::::::::::::.::.:::::::::: ::.
CCDS38 RSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNP
410 420 430 440 450 460
220 230 240 250 260 270
pF1KE0 QYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARH
.:.:::: :::::: ::::.::..:::.::::::::::::..:...::.:::.::: : :
CCDS38 MYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYH
470 480 490 500 510 520
280 290 300 310 320 330
pF1KE0 EHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEM-IRHREQEE-
::: :.:::::::::::::.:::.:::.::::..:::.:::.::::::: ::.::.::
CCDS38 EHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQ
530 540 550 560 570 580
340 350
pF1KE0 LRRQQEGFKPNYMENGDKRKCG
.:::.:
CCDS38 MRRQREESYSRMGYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGV
590 600 610 620 630 640
>>CCDS55445.1 NONO gene_id:4841|Hs108|chrX (382 aa)
initn: 1746 init1: 1369 opt: 1427 Z-score: 827.9 bits: 161.8 E(32554): 8.6e-40
Smith-Waterman score: 1427; 73.0% identity (92.6% similar) in 285 aa overlap (63-347:2-285)
40 50 60 70 80 90
pF1KE0 SFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRT
..:::.::. .::::..:.::::::::.::
CCDS55 MRKLFEKYGKAGEVFIHKDKGFGFIRLETRT
10 20 30
100 110 120 130 140 150
pF1KE0 LAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVV
::::::.:::. :... ::.::: :.:.:::.:: :::::::.::: :: ::.:::.
CCDS55 LAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVI
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE0 VDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKL
:::::: .:::.:::..:: :::::.::..:.::::: :::: ::::.:.:::.::::::
CCDS55 VDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKL
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE0 MQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEM
. :.::.::::::::::::::.::.::: ::::: ::::::..::::::.::.:::: ::
CCDS55 VIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEM
160 170 180 190 200 210
280 290 300 310 320 330
pF1KE0 EAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRHRE
::::::::.::::::::::::::::.:::.:::.:::::..::.:::.::::::: :...
CCDS55 EAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEM-RRQQ
220 230 240 250 260 270
340 350
pF1KE0 QEELRRQQEGFKPNYMENGDKRKCG
.: .:::::::: ..
CCDS55 EEMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATM
280 290 300 310 320 330
357 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:29:20 2016 done: Sat Nov 5 13:29:21 2016
Total Scan time: 2.230 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]