Result of FASTA (ccds) for
pF1KE0665
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0665, 240 aa
1>>>pF1KE0665 240 - 240 aa - 240 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7986+/-0.000981; mu= 9.9663+/- 0.059
mean_var=189.2424+/-37.808, 0's: 0 Z-trim(111.8): 31 B-trim: 0 in 0/51
Lambda= 0.093232
statistics sampled from 12679 (12699) to 12679 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.39), width: 16
Scan time: 2.090
The best scores are: opt bits E(32554)
CCDS13694.1 U2AF1 gene_id:7307|Hs108|chr21 ( 240) 1677 237.2 7.3e-63
CCDS82649.1 U2AF1L5 gene_id:102724594|Hs108|chr21 ( 240) 1677 237.2 7.3e-63
CCDS33574.1 U2AF1 gene_id:7307|Hs108|chr21 ( 240) 1638 232.0 2.8e-61
CCDS82650.1 U2AF1L5 gene_id:102724594|Hs108|chr21 ( 240) 1638 232.0 2.8e-61
CCDS82648.1 U2AF1L5 gene_id:102724594|Hs108|chr21 ( 167) 1180 170.2 7.7e-43
CCDS42948.1 U2AF1 gene_id:7307|Hs108|chr21 ( 167) 1180 170.2 7.7e-43
CCDS42551.1 U2AF1L4 gene_id:199746|Hs108|chr19 ( 181) 680 103.0 1.4e-22
CCDS14172.1 ZRSR2 gene_id:8233|Hs108|chrX ( 482) 444 71.7 9.5e-13
>>CCDS13694.1 U2AF1 gene_id:7307|Hs108|chr21 (240 aa)
initn: 1677 init1: 1677 opt: 1677 Z-score: 1242.1 bits: 237.2 E(32554): 7.3e-63
Smith-Waterman score: 1677; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KE0 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
190 200 210 220 230 240
>>CCDS82649.1 U2AF1L5 gene_id:102724594|Hs108|chr21 (240 aa)
initn: 1677 init1: 1677 opt: 1677 Z-score: 1242.1 bits: 237.2 E(32554): 7.3e-63
Smith-Waterman score: 1677; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KE0 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
190 200 210 220 230 240
>>CCDS33574.1 U2AF1 gene_id:7307|Hs108|chr21 (240 aa)
initn: 1638 init1: 1638 opt: 1638 Z-score: 1213.7 bits: 232.0 E(32554): 2.8e-61
Smith-Waterman score: 1638; 97.1% identity (98.8% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KE0 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ
:::::::::::::::::::::::::::::::::::::::::::::: . :::::::::.:
CCDS33 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
.::: .::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
190 200 210 220 230 240
>>CCDS82650.1 U2AF1L5 gene_id:102724594|Hs108|chr21 (240 aa)
initn: 1638 init1: 1638 opt: 1638 Z-score: 1213.7 bits: 232.0 E(32554): 2.8e-61
Smith-Waterman score: 1638; 97.1% identity (98.8% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KE0 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ
:::::::::::::::::::::::::::::::::::::::::::::: . :::::::::.:
CCDS82 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
.::: .::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
190 200 210 220 230 240
>>CCDS82648.1 U2AF1L5 gene_id:102724594|Hs108|chr21 (167 aa)
initn: 1180 init1: 1180 opt: 1180 Z-score: 882.6 bits: 170.2 E(32554): 7.7e-43
Smith-Waterman score: 1180; 100.0% identity (100.0% similar) in 167 aa overlap (74-240:1-167)
50 60 70 80 90 100
pF1KE0 QTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCD
::::::::::::::::::::::::::::::
CCDS82 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCD
10 20 30
110 120 130 140 150 160
pF1KE0 NLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGEC
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE0 TRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGG
100 110 120 130 140 150
230 240
pF1KE0 RERDRRRSRDRERSGRF
:::::::::::::::::
CCDS82 RERDRRRSRDRERSGRF
160
>>CCDS42948.1 U2AF1 gene_id:7307|Hs108|chr21 (167 aa)
initn: 1180 init1: 1180 opt: 1180 Z-score: 882.6 bits: 170.2 E(32554): 7.7e-43
Smith-Waterman score: 1180; 100.0% identity (100.0% similar) in 167 aa overlap (74-240:1-167)
50 60 70 80 90 100
pF1KE0 QTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCD
::::::::::::::::::::::::::::::
CCDS42 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCD
10 20 30
110 120 130 140 150 160
pF1KE0 NLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGEC
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE0 TRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGG
100 110 120 130 140 150
230 240
pF1KE0 RERDRRRSRDRERSGRF
:::::::::::::::::
CCDS42 RERDRRRSRDRERSGRF
160
>>CCDS42551.1 U2AF1L4 gene_id:199746|Hs108|chr19 (181 aa)
initn: 688 init1: 666 opt: 680 Z-score: 518.7 bits: 103.0 E(32554): 1.4e-22
Smith-Waterman score: 892; 64.2% identity (74.8% similar) in 218 aa overlap (1-212:1-179)
10 20 30 40 50 60
pF1KE0 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ
:::::::::::::::::::::::::.::::::::::::::::::
CCDS42 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ----------------
10 20 30 40
70 80 90 100 110 120
pF1KE0 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
:::::..:::::.::::::::::::::::::::::::
CCDS42 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE
50 60 70 80
130 140 150 160 170 180
pF1KE0 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
::.:.:: .:.::::::: .:.::::::::::.:::::::::::::::::::::.:::..
CCDS42 EDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQN
90 100 110 120 130 140
190 200 210 220 230
pF1KE0 LRRELYGR--RRK---KHRSRSRSRERRSR-SRDRGRGGGGGGGGGGGGRERDRRRSRDR
:.:.:::: ::. . .. . ::: : : :. .:
CCDS42 LQRQLYGRGPRRRSPPRFHTGHHPRERNHRCSPDHWHGRF
150 160 170 180
240
pF1KE0 ERSGRF
>>CCDS14172.1 ZRSR2 gene_id:8233|Hs108|chrX (482 aa)
initn: 475 init1: 230 opt: 444 Z-score: 342.3 bits: 71.7 E(32554): 9.5e-13
Smith-Waterman score: 461; 35.1% identity (60.3% similar) in 239 aa overlap (12-234:166-403)
10 20 30 40
pF1KE0 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPT
:::..:: :: : :::: :::::: :: ::
CCDS14 LQKMLDQAENELENGTTWQNPEPPVDFRVMEKDRANCPFYSKTGACRFGDRCSRKHNFPT
140 150 160 170 180 190
50 60 70 80 90
pF1KE0 FSQTIALLNIYRN---PQNSSQSAD-GLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVE
: :. . ... . : .. : :. : ... .:.:.:. :... :.:
CCDS14 SSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSEEETYQQFLDFYEDVLPEFKN-VGKVI
200 210 220 230 240 250
100 110 120 130 140 150
pF1KE0 EMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQ
...: :: :: :::::... ::. . :. .:.::. :. .. :. ::: .. : :
CCDS14 QFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGL
260 270 280 290 300 310
160 170 180 190 200
pF1KE0 YEMGECTRGGFCNFMHL--KPISR--ELRRELYGRRRKKHRSRSRSRERRSR--------
.:. .: :: :::.:. .: .. : :..: . : ... ::: :
CCDS14 FEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSPDRTGSSFGKNSERRERMGHHDDYY
320 330 340 350 360 370
210 220 230 240
pF1KE0 SRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
:: ::: . . . . : .:. :: :
CCDS14 SRLRGRRNPSPDHSYKRNGESERKSSRHRGKKSHKRTSKSRERHNSRSRGRNRDRSRDRS
380 390 400 410 420 430
240 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:19:16 2016 done: Wed Nov 2 18:19:17 2016
Total Scan time: 2.090 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]