FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0657, 233 aa
  1>>>pF1KE0657 233 - 233 aa - 233 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7817+/-0.00098; mu= 2.5321+/- 0.058
 mean_var=164.5968+/-32.120, 0's: 0 Z-trim(109.6): 151  B-trim: 115 in 1/52
 Lambda= 0.099969
 statistics sampled from 10799 (10977) to 10799 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.337), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS9021.1 LIN7A gene_id:8825|Hs108|chr12          ( 233) 1492 226.8 9.2e-60
CCDS7864.1 LIN7C gene_id:55327|Hs108|chr11         ( 197) 1039 161.4 3.8e-40
CCDS12757.1 LIN7B gene_id:64130|Hs108|chr19        ( 207) 1038 161.3 4.3e-40


>>CCDS9021.1 LIN7A gene_id:8825|Hs108|chr12               (233 aa)
 initn: 1492 init1: 1492 opt: 1492  Z-score: 1186.4  bits: 226.8 E(32554): 9.2e-60
Smith-Waterman score: 1492; 100.0% identity (100.0% similar) in 233 aa overlap (1-233:1-233)

               10        20        30        40        50        60
pF1KE0 MLKPSVTSAPTADMATLTVVQPLTLDRDVARAIELLEKLQESGEVPVHKLQSLKKVLQSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MLKPSVTSAPTADMATLTVVQPLTLDRDVARAIELLEKLQESGEVPVHKLQSLKKVLQSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FCTAIREVYQYMHETITVNGCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 FCTAIREVYQYMHETITVNGCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NVMGGKEQNSPIYISRIIPGGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 NVMGGKEQNSPIYISRIIPGGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKD
              130       140       150       160       170       180

              190       200       210       220       230   
pF1KE0 SVKLVVRYTPKVLEEMEARFEKLRTARRRQQQQLLIQQQQQQQQQQTQQNHMS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SVKLVVRYTPKVLEEMEARFEKLRTARRRQQQQLLIQQQQQQQQQQTQQNHMS
              190       200       210       220       230   

>>CCDS7864.1 LIN7C gene_id:55327|Hs108|chr11              (197 aa)
 initn: 1038 init1: 1038 opt: 1039  Z-score: 834.3  bits: 161.4 E(32554): 3.8e-40
Smith-Waterman score: 1039; 79.3% identity (94.4% similar) in 198 aa overlap (14-211:1-196)

               10        20        30        40        50        60
pF1KE0 MLKPSVTSAPTADMATLTVVQPLTLDRDVARAIELLEKLQESGEVPVHKLQSLKKVLQSE
                    ::.:   .:. :.::. ::::::::::.::::: .:::.:..:::::
CCDS78              MAALG--EPVRLERDICRAIELLEKLQRSGEVPPQKLQALQRVLQSE
                              10        20        30        40     

               70        80        90       100       110       120
pF1KE0 FCTAIREVYQYMHETITVNGCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGF
       ::.:.::::....::. ... :: :: :::::::::::::::::::::::::::.:::::
CCDS78 FCNAVREVYEHVYETVDISSSPEVRANATAKATVAAFAASEGHSHPRVVELPKTEEGLGF
          50        60        70        80        90       100     

              130       140       150       160       170       180
pF1KE0 NVMGGKEQNSPIYISRIIPGGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKD
       :.:::::::::::::::::::.:.::::::::::::::::::::::::::::::::::. 
CCDS78 NIMGGKEQNSPIYISRIIPGGIADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQG
         110       120       130       140       150       160     

              190       200       210       220       230   
pF1KE0 SVKLVVRYTPKVLEEMEARFEKLRTARRRQQQQLLIQQQQQQQQQQTQQNHMS
       .::::::::::::::::.::::.:.:.::::                      
CCDS78 KVKLVVRYTPKVLEEMESRFEKMRSAKRRQQT                     
         170       180       190                            

>>CCDS12757.1 LIN7B gene_id:64130|Hs108|chr19             (207 aa)
 initn: 1082 init1: 1028 opt: 1038  Z-score: 833.2  bits: 161.3 E(32554): 4.3e-40
Smith-Waterman score: 1038; 78.5% identity (95.5% similar) in 200 aa overlap (14-213:1-198)

               10        20        30        40        50        60
pF1KE0 MLKPSVTSAPTADMATLTVVQPLTLDRDVARAIELLEKLQESGEVPVHKLQSLKKVLQSE
                    ::.:  :.:: :.:::.::.::::.::.:::.: .:::.:..::::.
CCDS12              MAAL--VEPLGLERDVSRAVELLERLQRSGELPPQKLQALQRVLQSR
                              10        20        30        40     

               70        80        90       100       110       120
pF1KE0 FCTAIREVYQYMHETITVNGCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGF
       ::.::::::. ...:. ..:  :.::.::::::::::.:::::.::::::::::::::::
CCDS12 FCSAIREVYEQLYDTLDITGSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGF
          50        60        70        80        90       100     

              130       140       150       160       170       180
pF1KE0 NVMGGKEQNSPIYISRIIPGGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKD
       :.::::::::::::::.::::::.::::::::::::::::::::::.:::::::::::. 
CCDS12 NIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQG
         110       120       130       140       150       160     

              190       200       210       220       230   
pF1KE0 SVKLVVRYTPKVLEEMEARFEKLRTARRRQQQQLLIQQQQQQQQQQTQQNHMS
       ::::::::::.:::::::::::.:.::::::.:                    
CCDS12 SVKLVVRYTPRVLEEMEARFEKMRSARRRQQHQSYSSLESRG           
         170       180       190       200                  




233 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:40:26 2016 done: Wed Nov  2 18:40:26 2016
 Total Scan time:  1.720 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]