Result of FASTA (omim) for
pF1KE0654
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0654, 386 aa
1>>>pF1KE0654 386 - 386 aa - 386 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4718+/-0.000484; mu= 19.5749+/- 0.031
mean_var=249.4687+/-58.561, 0's: 0 Z-trim(115.7): 364 B-trim: 1650 in 1/58
Lambda= 0.081202
statistics sampled from 25785 (26333) to 25785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.309), width: 16
Scan time: 6.350
The best scores are: opt bits E(85289)
NP_071505 (OMIM: 603518,604454) nucleolysin TIA-1 ( 386) 2691 328.9 1.3e-89
XP_011531379 (OMIM: 603518,604454) PREDICTED: nucl ( 385) 2672 326.6 6e-89
XP_016860278 (OMIM: 603518,604454) PREDICTED: nucl ( 349) 2442 299.6 7.4e-81
XP_005264585 (OMIM: 603518,604454) PREDICTED: nucl ( 321) 2246 276.6 5.9e-74
XP_005264588 (OMIM: 603518,604454) PREDICTED: nucl ( 285) 2015 249.4 7.8e-66
XP_016860284 (OMIM: 603518,604454) PREDICTED: nucl ( 285) 2015 249.4 7.8e-66
XP_016860280 (OMIM: 603518,604454) PREDICTED: nucl ( 310) 2010 248.9 1.2e-65
XP_016860279 (OMIM: 603518,604454) PREDICTED: nucl ( 338) 2010 249.0 1.3e-65
NP_071320 (OMIM: 603518,604454) nucleolysin TIA-1 ( 375) 2010 249.0 1.3e-65
XP_005264584 (OMIM: 603518,604454) PREDICTED: nucl ( 374) 1991 246.8 6.2e-65
XP_016860282 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1806 224.9 1.8e-58
XP_016860283 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1806 224.9 1.8e-58
XP_011531384 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1806 224.9 1.8e-58
XP_016860281 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1806 224.9 1.8e-58
XP_011531383 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1806 224.9 1.8e-58
XP_011531380 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1806 224.9 1.8e-58
XP_016860286 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1762 219.7 6.1e-57
XP_016860285 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1762 219.7 6.1e-57
XP_016860289 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1762 219.7 6.1e-57
XP_016860287 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1762 219.7 6.1e-57
XP_016860288 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1762 219.7 6.1e-57
NP_001029097 (OMIM: 603413) nucleolysin TIAR isofo ( 392) 1697 212.4 1.5e-54
NP_001310898 (OMIM: 603413) nucleolysin TIAR isofo ( 336) 1516 191.1 3.3e-48
NP_001310899 (OMIM: 603413) nucleolysin TIAR isofo ( 353) 1516 191.1 3.4e-48
NP_003243 (OMIM: 603413) nucleolysin TIAR isoform ( 375) 1516 191.2 3.5e-48
NP_001310897 (OMIM: 603413) nucleolysin TIAR isofo ( 360) 1497 188.9 1.6e-47
NP_001310893 (OMIM: 603413) nucleolysin TIAR isofo ( 252) 1320 167.9 2.4e-41
NP_001310894 (OMIM: 603413) nucleolysin TIAR isofo ( 252) 1320 167.9 2.4e-41
XP_016872095 (OMIM: 603413) PREDICTED: nucleolysin ( 252) 1320 167.9 2.4e-41
NP_001310896 (OMIM: 603413) nucleolysin TIAR isofo ( 252) 1320 167.9 2.4e-41
NP_112241 (OMIM: 604680) polyadenylate-binding pro ( 631) 413 62.4 3.5e-09
NP_001229528 (OMIM: 604739) RNA-binding protein 39 ( 508) 287 47.4 8.7e-05
NP_001310353 (OMIM: 604739) RNA-binding protein 39 ( 529) 287 47.5 8.9e-05
NP_909122 (OMIM: 604739) RNA-binding protein 39 is ( 530) 287 47.5 8.9e-05
XP_016868729 (OMIM: 604819,615583) PREDICTED: poly ( 499) 282 46.8 0.00013
NP_001258029 (OMIM: 604819,615583) poly(U)-binding ( 499) 282 46.8 0.00013
NP_001258026 (OMIM: 604819,615583) poly(U)-binding ( 513) 282 46.9 0.00013
NP_001129505 (OMIM: 604819,615583) poly(U)-binding ( 516) 282 46.9 0.00013
XP_016868728 (OMIM: 604819,615583) PREDICTED: poly ( 516) 282 46.9 0.00013
NP_001258028 (OMIM: 604819,615583) poly(U)-binding ( 530) 282 46.9 0.00013
NP_001258025 (OMIM: 604819,615583) poly(U)-binding ( 541) 282 46.9 0.00013
NP_055096 (OMIM: 604819,615583) poly(U)-binding-sp ( 542) 282 46.9 0.00013
NP_001258027 (OMIM: 604819,615583) poly(U)-binding ( 558) 282 46.9 0.00014
NP_510965 (OMIM: 604819,615583) poly(U)-binding-sp ( 559) 282 46.9 0.00014
XP_016868725 (OMIM: 604819,615583) PREDICTED: poly ( 579) 282 47.0 0.00014
XP_011515232 (OMIM: 604819,615583) PREDICTED: poly ( 579) 282 47.0 0.00014
XP_016868724 (OMIM: 604819,615583) PREDICTED: poly ( 584) 282 47.0 0.00014
XP_016868726 (OMIM: 604819,615583) PREDICTED: poly ( 596) 282 47.0 0.00014
XP_016868723 (OMIM: 604819,615583) PREDICTED: poly ( 596) 282 47.0 0.00014
XP_011515231 (OMIM: 604819,615583) PREDICTED: poly ( 596) 282 47.0 0.00014
>>NP_071505 (OMIM: 603518,604454) nucleolysin TIA-1 isof (386 aa)
initn: 2691 init1: 2691 opt: 2691 Z-score: 1729.9 bits: 328.9 E(85289): 1.3e-89
Smith-Waterman score: 2691; 100.0% identity (100.0% similar) in 386 aa overlap (1-386:1-386)
10 20 30 40 50 60
pF1KE0 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
310 320 330 340 350 360
370 380
pF1KE0 QPPQGQNGSMLPNQPSGYRVAGYETQ
::::::::::::::::::::::::::
NP_071 QPPQGQNGSMLPNQPSGYRVAGYETQ
370 380
>>XP_011531379 (OMIM: 603518,604454) PREDICTED: nucleoly (385 aa)
initn: 2036 init1: 2001 opt: 2672 Z-score: 1717.9 bits: 326.6 E(85289): 6e-89
Smith-Waterman score: 2672; 99.7% identity (99.7% similar) in 386 aa overlap (1-386:1-385)
10 20 30 40 50 60
pF1KE0 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
XP_011 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQ-NQI
250 260 270 280 290
310 320 330 340 350 360
pF1KE0 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
300 310 320 330 340 350
370 380
pF1KE0 QPPQGQNGSMLPNQPSGYRVAGYETQ
::::::::::::::::::::::::::
XP_011 QPPQGQNGSMLPNQPSGYRVAGYETQ
360 370 380
>>XP_016860278 (OMIM: 603518,604454) PREDICTED: nucleoly (349 aa)
initn: 2442 init1: 2442 opt: 2442 Z-score: 1572.6 bits: 299.6 E(85289): 7.4e-81
Smith-Waterman score: 2442; 100.0% identity (100.0% similar) in 349 aa overlap (38-386:1-349)
10 20 30 40 50 60
pF1KE0 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN
::::::::::::::::::::::::::::::
XP_016 MIMDTAGNDPYCFVEFHEHRHAAAALAAMN
10 20 30
70 80 90 100 110 120
pF1KE0 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE0 DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYG
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE0 QWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQN
280 290 300 310 320 330
370 380
pF1KE0 GSMLPNQPSGYRVAGYETQ
:::::::::::::::::::
XP_016 GSMLPNQPSGYRVAGYETQ
340
>>XP_005264585 (OMIM: 603518,604454) PREDICTED: nucleoly (321 aa)
initn: 2246 init1: 2246 opt: 2246 Z-score: 1448.8 bits: 276.6 E(85289): 5.9e-74
Smith-Waterman score: 2246; 100.0% identity (100.0% similar) in 321 aa overlap (66-386:1-321)
40 50 60 70 80 90
pF1KE0 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSST
::::::::::::::::::::::::::::::
XP_005 MNGRKIMGKEVKVNWATTPSSQKKDTSSST
10 20 30
100 110 120 130 140 150
pF1KE0 VVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE0 NKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCT
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE0 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIE
160 170 180 190 200 210
280 290 300 310 320 330
pF1KE0 GHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMY
220 230 240 250 260 270
340 350 360 370 380
pF1KE0 GQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLPNQPSGYRVAGYETQ
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLPNQPSGYRVAGYETQ
280 290 300 310 320
>>XP_005264588 (OMIM: 603518,604454) PREDICTED: nucleoly (285 aa)
initn: 2015 init1: 2015 opt: 2015 Z-score: 1302.9 bits: 249.4 E(85289): 7.8e-66
Smith-Waterman score: 2015; 100.0% identity (100.0% similar) in 284 aa overlap (103-386:2-285)
80 90 100 110 120 130
pF1KE0 GKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI
::::::::::::::::::::::::::::::
XP_005 MQDHFHVFVGDLSPEITTEDIKAAFAPFGRI
10 20 30
140 150 160 170 180 190
pF1KE0 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 YESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE0 FVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQW
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE0 YGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLP
220 230 240 250 260 270
380
pF1KE0 NQPSGYRVAGYETQ
::::::::::::::
XP_005 NQPSGYRVAGYETQ
280
>>XP_016860284 (OMIM: 603518,604454) PREDICTED: nucleoly (285 aa)
initn: 2015 init1: 2015 opt: 2015 Z-score: 1302.9 bits: 249.4 E(85289): 7.8e-66
Smith-Waterman score: 2015; 100.0% identity (100.0% similar) in 284 aa overlap (103-386:2-285)
80 90 100 110 120 130
pF1KE0 GKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI
::::::::::::::::::::::::::::::
XP_016 MQDHFHVFVGDLSPEITTEDIKAAFAPFGRI
10 20 30
140 150 160 170 180 190
pF1KE0 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 YESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE0 FVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQW
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE0 YGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLP
220 230 240 250 260 270
380
pF1KE0 NQPSGYRVAGYETQ
::::::::::::::
XP_016 NQPSGYRVAGYETQ
280
>>XP_016860280 (OMIM: 603518,604454) PREDICTED: nucleoly (310 aa)
initn: 2004 init1: 2004 opt: 2010 Z-score: 1299.5 bits: 248.9 E(85289): 1.2e-65
Smith-Waterman score: 2147; 96.3% identity (96.6% similar) in 321 aa overlap (66-386:1-310)
40 50 60 70 80 90
pF1KE0 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSST
:::::::::::::::::::::::::::
XP_016 MNGRKIMGKEVKVNWATTPSSQKKDTS---
10 20
100 110 120 130 140 150
pF1KE0 VVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF
.:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 --------NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF
30 40 50 60 70
160 170 180 190 200 210
pF1KE0 NKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCT
80 90 100 110 120 130
220 230 240 250 260 270
pF1KE0 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIE
140 150 160 170 180 190
280 290 300 310 320 330
pF1KE0 GHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMY
200 210 220 230 240 250
340 350 360 370 380
pF1KE0 GQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLPNQPSGYRVAGYETQ
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLPNQPSGYRVAGYETQ
260 270 280 290 300 310
>>XP_016860279 (OMIM: 603518,604454) PREDICTED: nucleoly (338 aa)
initn: 2004 init1: 2004 opt: 2010 Z-score: 1299.2 bits: 249.0 E(85289): 1.3e-65
Smith-Waterman score: 2343; 96.6% identity (96.8% similar) in 349 aa overlap (38-386:1-338)
10 20 30 40 50 60
pF1KE0 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN
::::::::::::::::::::::::::::::
XP_016 MIMDTAGNDPYCFVEFHEHRHAAAALAAMN
10 20 30
70 80 90 100 110 120
pF1KE0 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA
::::::::::::::::::::::::: .:::::::::::::::::::::::
XP_016 GRKIMGKEVKVNWATTPSSQKKDTS-----------NHFHVFVGDLSPEITTEDIKAAFA
40 50 60 70
130 140 150 160 170 180
pF1KE0 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP
80 90 100 110 120 130
190 200 210 220 230 240
pF1KE0 APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE0 DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYG
200 210 220 230 240 250
310 320 330 340 350 360
pF1KE0 QWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQN
260 270 280 290 300 310
370 380
pF1KE0 GSMLPNQPSGYRVAGYETQ
:::::::::::::::::::
XP_016 GSMLPNQPSGYRVAGYETQ
320 330
>>NP_071320 (OMIM: 603518,604454) nucleolysin TIA-1 isof (375 aa)
initn: 2004 init1: 2004 opt: 2010 Z-score: 1298.8 bits: 249.0 E(85289): 1.3e-65
Smith-Waterman score: 2592; 96.9% identity (97.2% similar) in 386 aa overlap (1-386:1-375)
10 20 30 40 50 60
pF1KE0 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
:::::::::::::::::::::::::::::::: .::::::::::::::::
NP_071 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTS-----------NHFHVFVGDLSPEITTE
70 80 90 100
130 140 150 160 170 180
pF1KE0 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE0 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
290 300 310 320 330 340
370 380
pF1KE0 QPPQGQNGSMLPNQPSGYRVAGYETQ
::::::::::::::::::::::::::
NP_071 QPPQGQNGSMLPNQPSGYRVAGYETQ
350 360 370
>>XP_005264584 (OMIM: 603518,604454) PREDICTED: nucleoly (374 aa)
initn: 1384 init1: 1314 opt: 1991 Z-score: 1286.8 bits: 246.8 E(85289): 6.2e-65
Smith-Waterman score: 2573; 96.6% identity (96.9% similar) in 386 aa overlap (1-386:1-374)
10 20 30 40 50 60
pF1KE0 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
:::::::::::::::::::::::::::::::: .::::::::::::::::
XP_005 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTS-----------NHFHVFVGDLSPEITTE
70 80 90 100
130 140 150 160 170 180
pF1KE0 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
XP_005 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQ-NQI
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE0 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
290 300 310 320 330 340
370 380
pF1KE0 QPPQGQNGSMLPNQPSGYRVAGYETQ
::::::::::::::::::::::::::
XP_005 QPPQGQNGSMLPNQPSGYRVAGYETQ
350 360 370
386 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:46:17 2016 done: Wed Nov 2 18:46:18 2016
Total Scan time: 6.350 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]