Result of FASTA (ccds) for
pF1KE0653
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0653, 221 aa
1>>>pF1KE0653 221 - 221 aa - 221 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5286+/-0.000686; mu= 14.3417+/- 0.041
mean_var=104.5912+/-22.124, 0's: 0 Z-trim(112.6): 116 B-trim: 0 in 0/50
Lambda= 0.125408
statistics sampled from 13199 (13340) to 13199 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.41), width: 16
Scan time: 1.900
The best scores are: opt bits E(32554)
CCDS9199.1 SRSF9 gene_id:8683|Hs108|chr12 ( 221) 1568 293.4 7.6e-80
CCDS11600.1 SRSF1 gene_id:6426|Hs108|chr17 ( 248) 977 186.5 1.3e-47
CCDS58580.1 SRSF1 gene_id:6426|Hs108|chr17 ( 201) 865 166.2 1.4e-41
CCDS333.1 SRSF4 gene_id:6429|Hs108|chr1 ( 494) 414 85.0 9.4e-17
CCDS32109.1 SRSF5 gene_id:6430|Hs108|chr14 ( 272) 335 70.4 1.3e-12
>>CCDS9199.1 SRSF9 gene_id:8683|Hs108|chr12 (221 aa)
initn: 1568 init1: 1568 opt: 1568 Z-score: 1546.9 bits: 293.4 E(32554): 7.6e-80
Smith-Waterman score: 1568; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KE0 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 DPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 DPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 SGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI
130 140 150 160 170 180
190 200 210 220
pF1KE0 RVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
:::::::::::::::::::::::::::::::::::::::::
CCDS91 RVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
190 200 210 220
>>CCDS11600.1 SRSF1 gene_id:6426|Hs108|chr17 (248 aa)
initn: 1081 init1: 549 opt: 977 Z-score: 968.4 bits: 186.5 E(32554): 1.3e-47
Smith-Waterman score: 1004; 66.8% identity (78.8% similar) in 241 aa overlap (1-217:1-239)
10 20 30 40 50
pF1KE0 MSGWADERG--GEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVR
::: . :: :..: :::::::: :.: ::.::.::::: ::.:.::::.: :::::.
CCDS11 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
10 20 30 40 50 60
60 70 80 90 100
pF1KE0 FEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY---------GGRGGWPRGGRNGPPTRRS
::::::::::.:::.:::: ::::::::. :: :: ::: : :::.:::
CCDS11 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG-RYGPPSRRS
70 80 90 100 110
110 120 130 140 150 160
pF1KE0 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTK
. ::.:::::::::::::::::::::::::::: .::.:.::..::::: ::.::::.::
CCDS11 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK
120 130 140 150 160 170
170 180 190 200 210
pF1KE0 FRSHEGETSYIRVYPE--RSTSYGYSRSRSGSRGRD-----------SPYQSRGSPHYFS
::::::::.:::: . :: ::: ::::: ::.:. :: .:::::.: :
CCDS11 FRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRY-S
180 190 200 210 220 230
220
pF1KE0 PFRPY
:
CCDS11 PRHSRSRSRT
240
>>CCDS58580.1 SRSF1 gene_id:6426|Hs108|chr17 (201 aa)
initn: 507 init1: 462 opt: 865 Z-score: 860.1 bits: 166.2 E(32554): 1.4e-41
Smith-Waterman score: 875; 68.9% identity (82.4% similar) in 193 aa overlap (1-182:1-190)
10 20 30 40 50
pF1KE0 MSGWADERG--GEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVR
::: . :: :..: :::::::: :.: ::.::.::::: ::.:.::::.: :::::.
CCDS58 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
10 20 30 40 50 60
60 70 80 90 100
pF1KE0 FEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY---------GGRGGWPRGGRNGPPTRRS
::::::::::.:::.:::: ::::::::. :: :: ::: : :::.:::
CCDS58 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG-RYGPPSRRS
70 80 90 100 110
110 120 130 140 150 160
pF1KE0 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTK
. ::.:::::::::::::::::::::::::::: .::.:.::..::::: ::.::::.::
CCDS58 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE0 FRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
::::: ..: :.
CCDS58 FRSHE--VGYTRILFFDQNWIQWS
180 190 200
>>CCDS333.1 SRSF4 gene_id:6429|Hs108|chr1 (494 aa)
initn: 283 init1: 125 opt: 414 Z-score: 414.2 bits: 85.0 E(32554): 9.4e-17
Smith-Waterman score: 476; 42.9% identity (66.2% similar) in 210 aa overlap (15-211:3-204)
10 20 30 40 50 60
pF1KE0 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
:.:.: : ..::.:.: .: ::.: :..::: .: ::.:.
CCDS33 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYG-----FVEFD
10 20 30 40
70 80 90 100
pF1KE0 DPRDAEDAIYGRNGYDYGQCRLRVEF---PR---TYG-GRGGWP--RGGRN--GPPTRRS
: :::.::.: :: : :. :: :: .:: ::.:. :.::. ::::: .
CCDS33 DLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTR-T
50 60 70 80 90 100
110 120 130 140 150 160
pF1KE0 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GVGMVEYLRKEDMEYALRKLDD
..:..: .: :::::::.::.::.: :::..: . :..:.. ::. ::.:::
CCDS33 EYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDG
110 120 130 140 150 160
170 180 190 200 210 220
pF1KE0 TKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
:. ... .. : .:::::: ::.:. .:: :
CCDS33 TEVNGRK--IRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS
170 180 190 200 210 220
CCDS33 RSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNN
230 240 250 260 270 280
>>CCDS32109.1 SRSF5 gene_id:6430|Hs108|chr14 (272 aa)
initn: 446 init1: 155 opt: 335 Z-score: 340.2 bits: 70.4 E(32554): 1.3e-12
Smith-Waterman score: 427; 39.6% identity (61.8% similar) in 217 aa overlap (15-209:5-216)
10 20 30 40 50 60
pF1KE0 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
:...: : .::::.: .: :::::.:.:: .: :.::.::
CCDS32 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVEFE
10 20 30 40
70 80 90 100
pF1KE0 DPRDAEDAIYGRNGYDYGQCRLRVEFPR--TYGGRG-GW---------PRGGRNGPPTRR
:::::.::.: .: . . :. .: : . :::: : ::. : . : :
CCDS32 DPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVR
50 60 70 80 90 100
110 120 130 140 150 160
pF1KE0 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGV--GMVEYLRKEDMEYALRKL-
.. :..: .: ::::::: ::.::.: .::... . :.::. :.. :..::
CCDS32 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLS
110 120 130 140 150 160
170 180 190 200 210
pF1KE0 ----DDTKFRSHEGETSYIRVYPE---RSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPF
. :.. :: . : . :. : . ::::: ::.: : .::
CCDS32 GKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRS
170 180 190 200 210 220
220
pF1KE0 RPY
CCDS32 KSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
230 240 250 260 270
221 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:50:58 2016 done: Wed Nov 2 18:50:59 2016
Total Scan time: 1.900 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]