FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0648, 380 aa
  1>>>pF1KE0648 380 - 380 aa - 380 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0043+/-0.00119; mu= 8.3759+/- 0.070
 mean_var=178.8347+/-39.870, 0's: 0 Z-trim(107.2): 176  B-trim: 0 in 0/51
 Lambda= 0.095907
 statistics sampled from 9258 (9461) to 9258 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.291), width:  16
 Scan time:  2.860

The best scores are:                                      opt bits E(32554)
CCDS33266.1 NCK2 gene_id:8440|Hs108|chr2           ( 380) 2557 366.6  2e-101
CCDS3092.1 NCK1 gene_id:4690|Hs108|chr3            ( 377) 1794 261.1 1.2e-69
CCDS54644.1 NCK1 gene_id:4690|Hs108|chr3           ( 313) 1377 203.3 2.5e-52


>>CCDS33266.1 NCK2 gene_id:8440|Hs108|chr2                (380 aa)
 initn: 2557 init1: 2557 opt: 2557  Z-score: 1934.3  bits: 366.6 E(32554): 2e-101
Smith-Waterman score: 2557; 100.0% identity (100.0% similar) in 380 aa overlap (1-380:1-380)

               10        20        30        40        50        60
pF1KE0 MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SLKKGSLVKNLKDTLGLGKTRRKTSARDASPTPSTDAEYPANGSGADRIYDLNIPAFVKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SLKKGSLVKNLKDTLGLGKTRRKTSARDASPTPSTDAEYPANGSGADRIYDLNIPAFVKF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLEEVDEAAAESPSFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLEEVDEAAAESPSFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 SLRKGASLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SLRKGASLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 RGQVGLVPKNYVVVLSDGPALHPAHAPQISYTGPSSSGRFAGREWYYGNVTRHQAECALN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RGQVGLVPKNYVVVLSDGPALHPAHAPQISYTGPSSSGRFAGREWYYGNVTRHQAECALN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 ERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEHYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEHYK
              310       320       330       340       350       360

              370       380
pF1KE0 KAPIFTSEHGEKLYLVRALQ
       ::::::::::::::::::::
CCDS33 KAPIFTSEHGEKLYLVRALQ
              370       380

>>CCDS3092.1 NCK1 gene_id:4690|Hs108|chr3                 (377 aa)
 initn: 1773 init1: 731 opt: 1794  Z-score: 1363.8  bits: 261.1 E(32554): 1.2e-69
Smith-Waterman score: 1794; 69.4% identity (87.4% similar) in 382 aa overlap (1-379:1-376)

               10        20        30        40        50        60
pF1KE0 MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKN
       :.:::.:.::.::.:::.::::::::::::::::::.::::::. :.::.::::::::::
CCDS30 MAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SLKKGSLVKNLKDTLGLGKTRRKTSARDASPTPSTDAEYPANGSGADRIYDLNIPAFVKF
       : .:.:.:::::::::.::..:: :. : : .:. :. .   :   .:.::::.::.:::
CCDS30 SARKASIVKNLKDTLGIGKVKRKPSVPD-SASPADDS-FVDPG---ERLYDLNMPAYVKF
               70        80         90        100          110     

              130       140       150       160       170       180
pF1KE0 AYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLEEVDEAAAESPSFL
        :.:::::::::.::..: :::::::::::::::::.:::::::: :: :   ..  . :
CCDS30 NYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLGDHVGSL
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KE0 SLRKGASLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA
       : . .: ..: . ..::::::.:::::: ..::::::::..:.::::::::::::::.. 
CCDS30 SEKLAAVVNNLNTGQVLHVVQALYPFSSSNDEELNFEKGDVMDVIEKPENDPEWWKCRKI
         180       190       200       210       220       230     

              250          260       270       280       290       
pF1KE0 RGQVGLVPKNYVVVLSDGP---ALHPAHAPQISYTGPSSSGRFAGREWYYGNVTRHQAEC
        :.:::::::::.:....:   .:.:.  :: .:  :: .:.:::  ::::.::::::: 
CCDS30 NGMVGLVPKNYVTVMQNNPLTSGLEPS-PPQCDYIRPSLTGKFAGNPWYYGKVTRHQAEM
         240       250       260        270       280       290    

       300       310       320       330       340       350       
pF1KE0 ALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVE
       :::::: :::::::::::::.::::::::.:::::::::: ..:::::::.: ::.::::
CCDS30 ALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCIGQRKFSTMEELVE
          300       310       320       330       340       350    

       360       370       380
pF1KE0 HYKKAPIFTSEHGEKLYLVRALQ
       :::::::::::.:::::::. : 
CCDS30 HYKKAPIFTSEQGEKLYLVKHLS
          360       370       

>>CCDS54644.1 NCK1 gene_id:4690|Hs108|chr3                (313 aa)
 initn: 1396 init1: 731 opt: 1377  Z-score: 1053.0  bits: 203.3 E(32554): 2.5e-52
Smith-Waterman score: 1377; 66.0% identity (84.9% similar) in 312 aa overlap (71-379:7-312)

               50        60        70        80        90       100
pF1KE0 VRNAANRTGYVPSNYVERKNSLKKGSLVKNLKDTLGLGKTRRKTSARDASPTPSTDAEYP
                                     .:: ...::..:: :. : : .:. :. . 
CCDS54                         MDWLNVFKDFFSIGKVKRKPSVPD-SASPADDS-FV
                                       10        20         30     

              110       120       130       140       150       160
pF1KE0 ANGSGADRIYDLNIPAFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWF
         :   .:.::::.::.::: :.:::::::::.::..: :::::::::::::::::.:::
CCDS54 DPG---ERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWF
              40        50        60        70        80        90 

              170       180       190       200       210       220
pF1KE0 PSNYVLEEVDEAAAESPSFLSLRKGASLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGE
       ::::: :: :   ..  . :: . .: ..: . ..::::::.:::::: ..::::::::.
CCDS54 PSNYVTEEGDSPLGDHVGSLSEKLAAVVNNLNTGQVLHVVQALYPFSSSNDEELNFEKGD
             100       110       120       130       140       150 

              230       240       250          260       270       
pF1KE0 TMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGP---ALHPAHAPQISYTGPSSS
       .:.::::::::::::::..  :.:::::::::.:....:   .:.:.  :: .:  :: .
CCDS54 VMDVIEKPENDPEWWKCRKINGMVGLVPKNYVTVMQNNPLTSGLEPS-PPQCDYIRPSLT
             160       170       180       190        200       210

       280       290       300       310       320       330       
pF1KE0 GRFAGREWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQL
       :.:::  ::::.::::::: :::::: :::::::::::::.::::::::.::::::::::
CCDS54 GKFAGNPWYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQL
              220       230       240       250       260       270

       340       350       360       370       380
pF1KE0 VDNVYCIGQRRFHTMDELVEHYKKAPIFTSEHGEKLYLVRALQ
        ..:::::::.: ::.:::::::::::::::.:::::::. : 
CCDS54 KETVYCIGQRKFSTMEELVEHYKKAPIFTSEQGEKLYLVKHLS
              280       290       300       310   




380 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:15:54 2016 done: Sat Nov  5 04:15:54 2016
 Total Scan time:  2.860 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]