Result of FASTA (omim) for
pF1KE0641
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0641, 217 aa
1>>>pF1KE0641 217 - 217 aa - 217 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0992+/-0.000333; mu= 9.3498+/- 0.022
mean_var=224.8120+/-50.790, 0's: 0 Z-trim(122.0): 61 B-trim: 6042 in 3/55
Lambda= 0.085539
statistics sampled from 39278 (39451) to 39278 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.463), width: 16
Scan time: 5.160
The best scores are: opt bits E(85289)
NP_149105 (OMIM: 610750) zinc finger CCHC-type and ( 217) 1422 187.1 1.9e-47
XP_016875613 (OMIM: 610750) PREDICTED: zinc finger ( 176) 1166 155.4 5.5e-38
XP_005264542 (OMIM: 600572) PREDICTED: serine/argi ( 223) 220 38.8 0.0088
NP_001182375 (OMIM: 600572) serine/arginine-rich s ( 226) 220 38.8 0.0089
XP_005264541 (OMIM: 600572) PREDICTED: serine/argi ( 235) 220 38.8 0.0091
NP_001026854 (OMIM: 600572) serine/arginine-rich s ( 238) 220 38.8 0.0092
>>NP_149105 (OMIM: 610750) zinc finger CCHC-type and RNA (217 aa)
initn: 1422 init1: 1422 opt: 1422 Z-score: 972.7 bits: 187.1 E(85289): 1.9e-47
Smith-Waterman score: 1422; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KE0 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 KDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 PKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEE
130 140 150 160 170 180
190 200 210
pF1KE0 EQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD
:::::::::::::::::::::::::::::::::::::
NP_149 EQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD
190 200 210
>>XP_016875613 (OMIM: 610750) PREDICTED: zinc finger CCH (176 aa)
initn: 1166 init1: 1166 opt: 1166 Z-score: 803.0 bits: 155.4 E(85289): 5.5e-38
Smith-Waterman score: 1166; 100.0% identity (100.0% similar) in 176 aa overlap (42-217:1-176)
20 30 40 50 60 70
pF1KE0 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI
::::::::::::::::::::::::::::::
XP_016 MKDKDTRKSKGVAFILFLDKDSAQNCTRAI
10 20 30
80 90 100 110 120 130
pF1KE0 NNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGEREPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGEREPP
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE0 KKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEEEQKKWKPSSGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEEEQKKWKPSSGV
100 110 120 130 140 150
200 210
pF1KE0 PSTSDDSRRPRIKKSTYFSDEEELSD
::::::::::::::::::::::::::
XP_016 PSTSDDSRRPRIKKSTYFSDEEELSD
160 170
>>XP_005264542 (OMIM: 600572) PREDICTED: serine/arginine (223 aa)
initn: 161 init1: 108 opt: 220 Z-score: 170.9 bits: 38.8 E(85289): 0.0088
Smith-Waterman score: 220; 28.6% identity (60.0% similar) in 140 aa overlap (4-140:5-139)
10 20 30 40 50
pF1KE0 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFL
: ... :::.:: . ...: : :: :: . : : .:. : ::. :
XP_005 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 DKDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIR---RRNYFDKSKCYECGESGHL
: .:.. .:....: . : ... .. : ..: : :: . ...::::::.::
XP_005 DPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 SYACPKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQA
.: : . .: ... .....
XP_005 AYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSAS
120 130 140 150 160 170
>>NP_001182375 (OMIM: 600572) serine/arginine-rich splic (226 aa)
initn: 200 init1: 105 opt: 220 Z-score: 170.8 bits: 38.8 E(85289): 0.0089
Smith-Waterman score: 220; 28.6% identity (60.0% similar) in 140 aa overlap (4-140:5-139)
10 20 30 40 50
pF1KE0 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFL
: ... :::.:: . ...: : :: :: . : : .:. : ::. :
NP_001 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 DKDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIR---RRNYFDKSKCYECGESGHL
: .:.. .:....: . : ... .. : ..: : :: . ...::::::.::
NP_001 DPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 SYACPKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQA
.: : . .: ... .....
NP_001 AYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSAS
120 130 140 150 160 170
>>XP_005264541 (OMIM: 600572) PREDICTED: serine/arginine (235 aa)
initn: 161 init1: 108 opt: 220 Z-score: 170.7 bits: 38.8 E(85289): 0.0091
Smith-Waterman score: 220; 28.6% identity (60.0% similar) in 140 aa overlap (4-140:5-139)
10 20 30 40 50
pF1KE0 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFL
: ... :::.:: . ...: : :: :: . : : .:. : ::. :
XP_005 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 DKDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIR---RRNYFDKSKCYECGESGHL
: .:.. .:....: . : ... .. : ..: : :: . ...::::::.::
XP_005 DPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 SYACPKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQA
.: : . .: ... .....
XP_005 AYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSAS
120 130 140 150 160 170
>>NP_001026854 (OMIM: 600572) serine/arginine-rich splic (238 aa)
initn: 200 init1: 105 opt: 220 Z-score: 170.6 bits: 38.8 E(85289): 0.0092
Smith-Waterman score: 220; 28.6% identity (60.0% similar) in 140 aa overlap (4-140:5-139)
10 20 30 40 50
pF1KE0 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFL
: ... :::.:: . ...: : :: :: . : : .:. : ::. :
NP_001 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 DKDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIR---RRNYFDKSKCYECGESGHL
: .:.. .:....: . : ... .. : ..: : :: . ...::::::.::
NP_001 DPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 SYACPKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQA
.: : . .: ... .....
NP_001 AYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSAS
120 130 140 150 160 170
217 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:14:24 2016 done: Wed Nov 2 19:14:24 2016
Total Scan time: 5.160 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]