Result of FASTA (ccds) for
pF1KE0637
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0637, 209 aa
1>>>pF1KE0637 209 - 209 aa - 209 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9021+/-0.000805; mu= 11.9992+/- 0.048
mean_var=94.4534+/-19.837, 0's: 0 Z-trim(110.3): 38 B-trim: 727 in 1/50
Lambda= 0.131967
statistics sampled from 11505 (11542) to 11505 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.355), width: 16
Scan time: 1.600
The best scores are: opt bits E(32554)
CCDS32271.1 RBPMS2 gene_id:348093|Hs108|chr15 ( 209) 1402 276.4 9e-75
CCDS6077.1 RBPMS gene_id:11030|Hs108|chr8 ( 196) 903 181.4 3.4e-46
CCDS34875.1 RBPMS gene_id:11030|Hs108|chr8 ( 204) 796 161.0 4.8e-40
CCDS34876.1 RBPMS gene_id:11030|Hs108|chr8 ( 219) 791 160.1 9.7e-40
>>CCDS32271.1 RBPMS2 gene_id:348093|Hs108|chr15 (209 aa)
initn: 1402 init1: 1402 opt: 1402 Z-score: 1455.9 bits: 276.4 E(32554): 9e-75
Smith-Waterman score: 1402; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KE0 MSNLKPDGEHGGSTGTGSGAGSGGALEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSNLKPDGEHGGSTGTGSGAGSGGALEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LIKLTARQPVGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLMAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LIKLTARQPVGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLMAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PNPSNVHPALGAHFIARDPYDLMGAALIPASPEAWAPYPLYTTELTPAISHAAFTYPTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PNPSNVHPALGAHFIARDPYDLMGAALIPASPEAWAPYPLYTTELTPAISHAAFTYPTAT
130 140 150 160 170 180
190 200
pF1KE0 AAAAALHAQVRWYPSSDTTQQGWKYRQFC
:::::::::::::::::::::::::::::
CCDS32 AAAAALHAQVRWYPSSDTTQQGWKYRQFC
190 200
>>CCDS6077.1 RBPMS gene_id:11030|Hs108|chr8 (196 aa)
initn: 827 init1: 782 opt: 903 Z-score: 942.8 bits: 181.4 E(32554): 3.4e-46
Smith-Waterman score: 903; 69.0% identity (83.0% similar) in 200 aa overlap (10-209:3-196)
10 20 30 40 50 60
pF1KE0 MSNLKPDGEHGGSTGTGSGAGSGGALEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGS
.::.. . . .. :::::::::::::.::::::::::::::::::::
CCDS60 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGS
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 LIKLTARQPVGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLMAT
:::::..:::::: ::::. :::::::::::::::: :::::::::::::::::.::..:
CCDS60 LIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 PNPSNVHPALGAHFIARDPYDLMGAALIPASPEAWAPYPLYTTELTPAISHAAFTYPTAT
::::. : .::::.::.: :: :.:::.::::::: .::.::. :::::
CCDS60 PNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYP---
120 130 140 150 160 170
190 200
pF1KE0 AAAAALHAQVRWYPSSDTTQQGWKYRQFC
:.::::.:: : :..:.:::: ::::
CCDS60 ---ASLHAQMRWLPPSEATSQGWKSRQFC
180 190
>>CCDS34875.1 RBPMS gene_id:11030|Hs108|chr8 (204 aa)
initn: 784 init1: 784 opt: 796 Z-score: 832.5 bits: 161.0 E(32554): 4.8e-40
Smith-Waterman score: 796; 63.8% identity (78.4% similar) in 199 aa overlap (10-203:3-201)
10 20 30 40 50 60
pF1KE0 MSNLKPDGEHGGSTGTGSGAGSGGALEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGS
.::.. . . .. :::::::::::::.::::::::::::::::::::
CCDS34 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGS
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 LIKLTARQPVGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLMAT
:::::..:::::: ::::. :::::::::::::::: :::::::::::::::::.::..:
CCDS34 LIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 PNPSNVHPALGAHFIARDPYDLMGAALIPASPEAWAPYPLYTTELTPAISHAAFTYPTAT
::::. : .::::.::.: :: :.:::.::::::: .::.::. :::::..
CCDS34 PNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASL
120 130 140 150 160 170
190 200
pF1KE0 AAAAALHAQVRWY-----PSSDTTQQGWKYRQFC
: :: :: :... .:
CCDS34 HAQLCEGQTVRRSHPLSAPSPDSASLAWFPV
180 190 200
>>CCDS34876.1 RBPMS gene_id:11030|Hs108|chr8 (219 aa)
initn: 827 init1: 782 opt: 791 Z-score: 826.9 bits: 160.1 E(32554): 9.7e-40
Smith-Waterman score: 791; 69.4% identity (82.8% similar) in 180 aa overlap (10-189:3-176)
10 20 30 40 50 60
pF1KE0 MSNLKPDGEHGGSTGTGSGAGSGGALEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGS
.::.. . . .. :::::::::::::.::::::::::::::::::::
CCDS34 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGS
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 LIKLTARQPVGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLMAT
:::::..:::::: ::::. :::::::::::::::: :::::::::::::::::.::..:
CCDS34 LIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 PNPSNVHPALGAHFIARDPYDLMGAALIPASPEAWAPYPLYTTELTPAISHAAFTYPTAT
::::. : .::::.::.: :: :.:::.::::::: .::.::. :::::
CCDS34 PNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYP---
120 130 140 150 160 170
190 200
pF1KE0 AAAAALHAQVRWYPSSDTTQQGWKYRQFC
:.::::
CCDS34 ---ASLHAQCFSPEAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
180 190 200 210
209 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:22:30 2016 done: Wed Nov 2 19:22:30 2016
Total Scan time: 1.600 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]