Result of FASTA (ccds) for
pF1KE0633
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0633, 202 aa
1>>>pF1KE0633 202 - 202 aa - 202 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6807+/-0.000701; mu= 13.7589+/- 0.042
mean_var=103.1030+/-20.423, 0's: 0 Z-trim(113.1): 12 B-trim: 0 in 0/52
Lambda= 0.126310
statistics sampled from 13787 (13799) to 13787 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.424), width: 16
Scan time: 2.200
The best scores are: opt bits E(32554)
CCDS12473.1 U2AF1L4 gene_id:199746|Hs108|chr19 ( 202) 1408 266.0 1.2e-71
CCDS42551.1 U2AF1L4 gene_id:199746|Hs108|chr19 ( 181) 723 141.1 4e-34
CCDS82648.1 U2AF1L5 gene_id:102724594|Hs108|chr21 ( 167) 369 76.5 9.9e-15
CCDS42948.1 U2AF1 gene_id:7307|Hs108|chr21 ( 167) 369 76.5 9.9e-15
CCDS82650.1 U2AF1L5 gene_id:102724594|Hs108|chr21 ( 240) 369 76.7 1.3e-14
CCDS82649.1 U2AF1L5 gene_id:102724594|Hs108|chr21 ( 240) 369 76.7 1.3e-14
CCDS13694.1 U2AF1 gene_id:7307|Hs108|chr21 ( 240) 369 76.7 1.3e-14
CCDS33574.1 U2AF1 gene_id:7307|Hs108|chr21 ( 240) 369 76.7 1.3e-14
>>CCDS12473.1 U2AF1L4 gene_id:199746|Hs108|chr19 (202 aa)
initn: 1408 init1: 1408 opt: 1408 Z-score: 1400.1 bits: 266.0 E(32554): 1.2e-71
Smith-Waterman score: 1408; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)
10 20 30 40 50 60
pF1KE0 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGNVPEVASATSCICGPFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGNVPEVASATSCICGPFP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RTSRGSSMGGDPGAGHPRGSILATIPERGTIGVPLITGMAASEALAPLPFTPNRDRCSWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RTSRGSSMGGDPGAGHPRGSILATIPERGTIGVPLITGMAASEALAPLPFTPNRDRCSWQ
130 140 150 160 170 180
190 200
pF1KE0 DLSSKPPSLSCPILPRLPGSIM
::::::::::::::::::::::
CCDS12 DLSSKPPSLSCPILPRLPGSIM
190 200
>>CCDS42551.1 U2AF1L4 gene_id:199746|Hs108|chr19 (181 aa)
initn: 717 init1: 717 opt: 723 Z-score: 726.1 bits: 141.1 E(32554): 4e-34
Smith-Waterman score: 723; 84.3% identity (89.8% similar) in 127 aa overlap (1-125:1-127)
10 20 30 40 50 60
pF1KE0 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGNVPEVASATSCICGPFP
:::::::::::::::::::::::::::::::::::::::::::.. :.. : .
CCDS42 NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYE
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 --RTSRGSSMGGDPGAGHPRGSILATIPERGTIGVPLITGMAASEALAPLPFTPNRDRCS
. .::
CCDS42 MGECTRGGFCNFMHLRPISQNLQRQLYGRGPRRRSPPRFHTGHHPRERNHRCSPDHWHGR
130 140 150 160 170 180
>>CCDS82648.1 U2AF1L5 gene_id:102724594|Hs108|chr21 (167 aa)
initn: 432 init1: 356 opt: 369 Z-score: 377.9 bits: 76.5 E(32554): 9.9e-15
Smith-Waterman score: 369; 61.6% identity (81.4% similar) in 86 aa overlap (42-125:8-93)
20 30 40 50 60 70
pF1KE0 EKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEMNVCDNLGDHLV
: .:::::..:::::.::::::::::::::
CCDS82 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLV
10 20 30
80 90 100 110 120
pF1KE0 GNVYVKFRREEDGERAVAELSNRWFNGQAVHGNVPEVASATSCICGPFP--RTSRGSSMG
::::::::::::.:.:: .:.::::::: .:... :.. : . . .::
CCDS82 GNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 GDPGAGHPRGSILATIPERGTIGVPLITGMAASEALAPLPFTPNRDRCSWQDLSSKPPSL
CCDS82 FMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRR
100 110 120 130 140 150
>>CCDS42948.1 U2AF1 gene_id:7307|Hs108|chr21 (167 aa)
initn: 432 init1: 356 opt: 369 Z-score: 377.9 bits: 76.5 E(32554): 9.9e-15
Smith-Waterman score: 369; 61.6% identity (81.4% similar) in 86 aa overlap (42-125:8-93)
20 30 40 50 60 70
pF1KE0 EKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEMNVCDNLGDHLV
: .:::::..:::::.::::::::::::::
CCDS42 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLV
10 20 30
80 90 100 110 120
pF1KE0 GNVYVKFRREEDGERAVAELSNRWFNGQAVHGNVPEVASATSCICGPFP--RTSRGSSMG
::::::::::::.:.:: .:.::::::: .:... :.. : . . .::
CCDS42 GNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 GDPGAGHPRGSILATIPERGTIGVPLITGMAASEALAPLPFTPNRDRCSWQDLSSKPPSL
CCDS42 FMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRR
100 110 120 130 140 150
>>CCDS82650.1 U2AF1L5 gene_id:102724594|Hs108|chr21 (240 aa)
initn: 730 init1: 356 opt: 369 Z-score: 375.9 bits: 76.7 E(32554): 1.3e-14
Smith-Waterman score: 540; 55.3% identity (66.0% similar) in 159 aa overlap (8-125:8-166)
10 20 30 40
pF1KE0 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ----------------
::::::::::::::::::.::::::::::::::::::
CCDS82 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ
10 20 30 40 50 60
50 60 70 80
pF1KE0 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE
:::::..:::::.::::::::::::::::::::::::
CCDS82 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
70 80 90 100 110 120
90 100 110 120 130
pF1KE0 EDGERAVAELSNRWFNGQAVHGNVPEVASATSCICGPFP--RTSRGSSMGGDPGAGHPRG
::.:.:: .:.::::::: .:... :.. : . . .::
CCDS82 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE0 SILATIPERGTIGVPLITGMAASEALAPLPFTPNRDRCSWQDLSSKPPSLSCPILPRLPG
CCDS82 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
190 200 210 220 230 240
>>CCDS82649.1 U2AF1L5 gene_id:102724594|Hs108|chr21 (240 aa)
initn: 728 init1: 356 opt: 369 Z-score: 375.9 bits: 76.7 E(32554): 1.3e-14
Smith-Waterman score: 540; 55.3% identity (66.0% similar) in 159 aa overlap (8-125:8-166)
10 20 30 40
pF1KE0 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ----------------
::::::::::::::::::.::::::::::::::::::
CCDS82 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ
10 20 30 40 50 60
50 60 70 80
pF1KE0 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE
:::::..:::::.::::::::::::::::::::::::
CCDS82 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
70 80 90 100 110 120
90 100 110 120 130
pF1KE0 EDGERAVAELSNRWFNGQAVHGNVPEVASATSCICGPFP--RTSRGSSMGGDPGAGHPRG
::.:.:: .:.::::::: .:... :.. : . . .::
CCDS82 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE0 SILATIPERGTIGVPLITGMAASEALAPLPFTPNRDRCSWQDLSSKPPSLSCPILPRLPG
CCDS82 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
190 200 210 220 230 240
>>CCDS13694.1 U2AF1 gene_id:7307|Hs108|chr21 (240 aa)
initn: 728 init1: 356 opt: 369 Z-score: 375.9 bits: 76.7 E(32554): 1.3e-14
Smith-Waterman score: 540; 55.3% identity (66.0% similar) in 159 aa overlap (8-125:8-166)
10 20 30 40
pF1KE0 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ----------------
::::::::::::::::::.::::::::::::::::::
CCDS13 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ
10 20 30 40 50 60
50 60 70 80
pF1KE0 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE
:::::..:::::.::::::::::::::::::::::::
CCDS13 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
70 80 90 100 110 120
90 100 110 120 130
pF1KE0 EDGERAVAELSNRWFNGQAVHGNVPEVASATSCICGPFP--RTSRGSSMGGDPGAGHPRG
::.:.:: .:.::::::: .:... :.. : . . .::
CCDS13 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE0 SILATIPERGTIGVPLITGMAASEALAPLPFTPNRDRCSWQDLSSKPPSLSCPILPRLPG
CCDS13 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
190 200 210 220 230 240
>>CCDS33574.1 U2AF1 gene_id:7307|Hs108|chr21 (240 aa)
initn: 730 init1: 356 opt: 369 Z-score: 375.9 bits: 76.7 E(32554): 1.3e-14
Smith-Waterman score: 540; 55.3% identity (66.0% similar) in 159 aa overlap (8-125:8-166)
10 20 30 40
pF1KE0 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ----------------
::::::::::::::::::.::::::::::::::::::
CCDS33 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ
10 20 30 40 50 60
50 60 70 80
pF1KE0 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE
:::::..:::::.::::::::::::::::::::::::
CCDS33 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
70 80 90 100 110 120
90 100 110 120 130
pF1KE0 EDGERAVAELSNRWFNGQAVHGNVPEVASATSCICGPFP--RTSRGSSMGGDPGAGHPRG
::.:.:: .:.::::::: .:... :.. : . . .::
CCDS33 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE0 SILATIPERGTIGVPLITGMAASEALAPLPFTPNRDRCSWQDLSSKPPSLSCPILPRLPG
CCDS33 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
190 200 210 220 230 240
202 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:28:23 2016 done: Wed Nov 2 19:28:24 2016
Total Scan time: 2.200 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]