Result of FASTA (omim) for
pF1KE0631
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0631, 200 aa
1>>>pF1KE0631 200 - 200 aa - 200 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5772+/-0.000425; mu= 18.4117+/- 0.027
mean_var=156.4621+/-37.987, 0's: 0 Z-trim(113.0): 410 B-trim: 1253 in 1/52
Lambda= 0.102534
statistics sampled from 21541 (22125) to 21541 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.259), width: 16
Scan time: 4.640
The best scores are: opt bits E(85289)
NP_002559 (OMIM: 604679) polyadenylate-binding pro ( 636) 1076 171.8 2.1e-42
XP_005250918 (OMIM: 604679) PREDICTED: polyadenyla ( 636) 1076 171.8 2.1e-42
NP_001129126 (OMIM: 603407) polyadenylate-binding ( 631) 1044 167.1 5.5e-41
NP_003810 (OMIM: 603407) polyadenylate-binding pro ( 644) 1044 167.1 5.5e-41
NP_001129125 (OMIM: 603407) polyadenylate-binding ( 660) 1044 167.1 5.6e-41
NP_112241 (OMIM: 604680) polyadenylate-binding pro ( 631) 965 155.4 1.8e-37
NP_543022 (OMIM: 300407) polyadenylate-binding pro ( 382) 782 127.9 2e-29
NP_005841 (OMIM: 154400,605593) splicing factor 3B ( 424) 359 65.4 1.4e-10
XP_016869913 (OMIM: 601673) PREDICTED: ELAV-like p ( 346) 293 55.5 1.1e-07
NP_001164666 (OMIM: 601673) ELAV-like protein 2 is ( 346) 293 55.5 1.1e-07
NP_001164668 (OMIM: 601673) ELAV-like protein 2 is ( 346) 293 55.5 1.1e-07
XP_016869914 (OMIM: 601673) PREDICTED: ELAV-like p ( 346) 293 55.5 1.1e-07
XP_016869910 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 293 55.5 1.2e-07
XP_016869911 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 293 55.5 1.2e-07
NP_004423 (OMIM: 601673) ELAV-like protein 2 isofo ( 359) 293 55.5 1.2e-07
XP_016869908 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 293 55.5 1.2e-07
XP_016869909 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 293 55.5 1.2e-07
XP_016869912 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 293 55.5 1.2e-07
XP_006716799 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 293 55.5 1.2e-07
XP_011516088 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 293 55.5 1.2e-07
XP_005251452 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 293 55.5 1.2e-07
XP_005251450 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 293 55.5 1.2e-07
XP_005251451 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 293 55.5 1.2e-07
XP_011516086 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 293 55.5 1.2e-07
XP_011516087 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 293 55.5 1.2e-07
XP_016869907 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 293 55.5 1.2e-07
XP_016869906 (OMIM: 601673) PREDICTED: ELAV-like p ( 373) 293 55.6 1.2e-07
XP_011516085 (OMIM: 601673) PREDICTED: ELAV-like p ( 374) 293 55.6 1.2e-07
XP_016869905 (OMIM: 601673) PREDICTED: ELAV-like p ( 375) 293 55.6 1.2e-07
XP_011516079 (OMIM: 601673) PREDICTED: ELAV-like p ( 375) 293 55.6 1.2e-07
XP_016869904 (OMIM: 601673) PREDICTED: ELAV-like p ( 376) 293 55.6 1.2e-07
XP_011516078 (OMIM: 601673) PREDICTED: ELAV-like p ( 376) 293 55.6 1.2e-07
XP_016869902 (OMIM: 601673) PREDICTED: ELAV-like p ( 387) 293 55.6 1.2e-07
XP_016869903 (OMIM: 601673) PREDICTED: ELAV-like p ( 387) 293 55.6 1.2e-07
XP_016869898 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 293 55.6 1.2e-07
XP_011516076 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 293 55.6 1.2e-07
XP_016869901 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 293 55.6 1.2e-07
XP_016869897 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 293 55.6 1.2e-07
XP_016869899 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 293 55.6 1.2e-07
XP_016869900 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 293 55.6 1.2e-07
XP_011516081 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 293 55.6 1.2e-07
XP_006716798 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 293 55.6 1.2e-07
XP_006716797 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 293 55.6 1.2e-07
XP_011516082 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 293 55.6 1.2e-07
XP_011516080 (OMIM: 601673) PREDICTED: ELAV-like p ( 392) 293 55.6 1.2e-07
NP_001311138 (OMIM: 168360) ELAV-like protein 4 is ( 352) 290 55.1 1.6e-07
NP_001311144 (OMIM: 168360) ELAV-like protein 4 is ( 358) 290 55.1 1.6e-07
XP_016856028 (OMIM: 168360) PREDICTED: ELAV-like p ( 359) 290 55.1 1.6e-07
NP_001311143 (OMIM: 168360) ELAV-like protein 4 is ( 365) 290 55.1 1.6e-07
NP_001311141 (OMIM: 168360) ELAV-like protein 4 is ( 365) 290 55.1 1.6e-07
>>NP_002559 (OMIM: 604679) polyadenylate-binding protein (636 aa)
initn: 1201 init1: 1076 opt: 1076 Z-score: 882.4 bits: 171.8 E(85289): 2.1e-42
Smith-Waterman score: 1076; 80.1% identity (93.4% similar) in 196 aa overlap (1-196:10-205)
10 20 30 40 50
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ
:::::::::::.::::::::::::::::::::.::: ::::::::::::.:
NP_002 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFS
::.::.:::.:.:::::::.::::::::::::::::::::.::::: :.:::::::. ::
NP_002 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE
::::::::::.:::.: ::::::::. ::.:::::. ::::.:: ::.:::::::.::::
NP_002 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
130 140 150 160 170 180
180 190 200
pF1KE0 AERGAWARQSTSADVKDFEEDTDEEATLR
:: :: :.. :.. .:.: :: :.:
NP_002 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
190 200 210 220 230 240
>--
initn: 409 init1: 172 opt: 268 Z-score: 236.4 bits: 52.3 E(85289): 2e-06
Smith-Waterman score: 268; 29.7% identity (59.3% similar) in 172 aa overlap (18-172:207-376)
10 20 30 40
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAY
: . :. :: ::... :. . .: :...
NP_002 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGF
180 190 200 210 220 230
50 60 70 80 90
pF1KE0 VNYQQPVDAKRALETLNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVG
:.... ::..:.. .: ..:. . . .:. : : .::
NP_002 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-
240 250 260 270 280 290
100 110 120 130 140 150
pF1KE0 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMN
:...::: ::.. : . :: ::.: : :: . ::.::: :.. : : .:. ::
NP_002 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN
300 310 320 330 340 350
160 170 180 190 200
pF1KE0 GMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEEATLR
: .. . ..:. . ..::.:
NP_002 GRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIP
360 370 380 390 400 410
>>XP_005250918 (OMIM: 604679) PREDICTED: polyadenylate-b (636 aa)
initn: 1201 init1: 1076 opt: 1076 Z-score: 882.4 bits: 171.8 E(85289): 2.1e-42
Smith-Waterman score: 1076; 80.1% identity (93.4% similar) in 196 aa overlap (1-196:10-205)
10 20 30 40 50
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ
:::::::::::.::::::::::::::::::::.::: ::::::::::::.:
XP_005 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFS
::.::.:::.:.:::::::.::::::::::::::::::::.::::: :.:::::::. ::
XP_005 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE
::::::::::.:::.: ::::::::. ::.:::::. ::::.:: ::.:::::::.::::
XP_005 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
130 140 150 160 170 180
180 190 200
pF1KE0 AERGAWARQSTSADVKDFEEDTDEEATLR
:: :: :.. :.. .:.: :: :.:
XP_005 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
190 200 210 220 230 240
>--
initn: 409 init1: 172 opt: 268 Z-score: 236.4 bits: 52.3 E(85289): 2e-06
Smith-Waterman score: 268; 29.7% identity (59.3% similar) in 172 aa overlap (18-172:207-376)
10 20 30 40
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAY
: . :. :: ::... :. . .: :...
XP_005 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGF
180 190 200 210 220 230
50 60 70 80 90
pF1KE0 VNYQQPVDAKRALETLNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVG
:.... ::..:.. .: ..:. . . .:. : : .::
XP_005 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-
240 250 260 270 280 290
100 110 120 130 140 150
pF1KE0 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMN
:...::: ::.. : . :: ::.: : :: . ::.::: :.. : : .:. ::
XP_005 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN
300 310 320 330 340 350
160 170 180 190 200
pF1KE0 GMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEEATLR
: .. . ..:. . ..::.:
XP_005 GRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIP
360 370 380 390 400 410
>>NP_001129126 (OMIM: 603407) polyadenylate-binding prot (631 aa)
initn: 1149 init1: 1044 opt: 1044 Z-score: 856.8 bits: 167.1 E(85289): 5.5e-41
Smith-Waterman score: 1044; 76.6% identity (93.4% similar) in 197 aa overlap (1-197:10-206)
10 20 30 40 50
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ
:::::::::: .:::::::::::::::.::::.::: ::::::::::::.:
NP_001 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFS
::.::.:::.:.:::::::.:.:::::::::::::::::::::::: :.:::::::. ::
NP_001 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE
::::::::::.:::.: :::.::::. ::.:..::. ::::.:: ::.:::::::.::::
NP_001 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
130 140 150 160 170 180
180 190 200
pF1KE0 AERGAWARQSTSADVKDFEEDTDEEATLR
:: :: :.. :.. .:.: :..:.:.
NP_001 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEK
190 200 210 220 230 240
>--
initn: 259 init1: 191 opt: 288 Z-score: 252.5 bits: 55.2 E(85289): 2.5e-07
Smith-Waterman score: 288; 33.7% identity (61.6% similar) in 172 aa overlap (18-172:207-376)
10 20 30 40
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAY
: : :: : ::... :: . .: :...
NP_001 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGF
180 190 200 210 220 230
50 60 70 80 90
pF1KE0 VNYQQPVDAKRALETLNFDVIKGRPVRIMWSQ----RDPSLRKS-------------GVG
:.:.. ::..:.: .: :.:. . . .: :. :... ::
NP_001 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-
240 250 260 270 280 290
100 110 120 130 140 150
pF1KE0 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMN
:..:::: :::.. : . :: ::.: : :: .. ::.::: :.. : : .:. ::
NP_001 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN
300 310 320 330 340 350
160 170 180 190 200
pF1KE0 GMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEEATLR
: ... . ..:. . ..::.:
NP_001 GRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVP
360 370 380 390 400 410
>>NP_003810 (OMIM: 603407) polyadenylate-binding protein (644 aa)
initn: 1149 init1: 1044 opt: 1044 Z-score: 856.8 bits: 167.1 E(85289): 5.5e-41
Smith-Waterman score: 1044; 76.6% identity (93.4% similar) in 197 aa overlap (1-197:10-206)
10 20 30 40 50
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ
:::::::::: .:::::::::::::::.::::.::: ::::::::::::.:
NP_003 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFS
::.::.:::.:.:::::::.:.:::::::::::::::::::::::: :.:::::::. ::
NP_003 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE
::::::::::.:::.: :::.::::. ::.:..::. ::::.:: ::.:::::::.::::
NP_003 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
130 140 150 160 170 180
180 190 200
pF1KE0 AERGAWARQSTSADVKDFEEDTDEEATLR
:: :: :.. :.. .:.: :..:.:.
NP_003 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEK
190 200 210 220 230 240
>--
initn: 259 init1: 191 opt: 288 Z-score: 252.4 bits: 55.3 E(85289): 2.6e-07
Smith-Waterman score: 288; 33.7% identity (61.6% similar) in 172 aa overlap (18-172:207-376)
10 20 30 40
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAY
: : :: : ::... :: . .: :...
NP_003 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGF
180 190 200 210 220 230
50 60 70 80 90
pF1KE0 VNYQQPVDAKRALETLNFDVIKGRPVRIMWSQ----RDPSLRKS-------------GVG
:.:.. ::..:.: .: :.:. . . .: :. :... ::
NP_003 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-
240 250 260 270 280 290
100 110 120 130 140 150
pF1KE0 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMN
:..:::: :::.. : . :: ::.: : :: .. ::.::: :.. : : .:. ::
NP_003 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN
300 310 320 330 340 350
160 170 180 190 200
pF1KE0 GMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEEATLR
: ... . ..:. . ..::.:
NP_003 GRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVP
360 370 380 390 400 410
>>NP_001129125 (OMIM: 603407) polyadenylate-binding prot (660 aa)
initn: 1149 init1: 1044 opt: 1044 Z-score: 856.7 bits: 167.1 E(85289): 5.6e-41
Smith-Waterman score: 1044; 76.6% identity (93.4% similar) in 197 aa overlap (1-197:10-206)
10 20 30 40 50
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ
:::::::::: .:::::::::::::::.::::.::: ::::::::::::.:
NP_001 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFS
::.::.:::.:.:::::::.:.:::::::::::::::::::::::: :.:::::::. ::
NP_001 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE
::::::::::.:::.: :::.::::. ::.:..::. ::::.:: ::.:::::::.::::
NP_001 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
130 140 150 160 170 180
180 190 200
pF1KE0 AERGAWARQSTSADVKDFEEDTDEEATLR
:: :: :.. :.. .:.: :..:.:.
NP_001 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEK
190 200 210 220 230 240
>--
initn: 259 init1: 191 opt: 288 Z-score: 252.3 bits: 55.3 E(85289): 2.6e-07
Smith-Waterman score: 288; 33.7% identity (61.6% similar) in 172 aa overlap (18-172:207-376)
10 20 30 40
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAY
: : :: : ::... :: . .: :...
NP_001 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGF
180 190 200 210 220 230
50 60 70 80 90
pF1KE0 VNYQQPVDAKRALETLNFDVIKGRPVRIMWSQ----RDPSLRKS-------------GVG
:.:.. ::..:.: .: :.:. . . .: :. :... ::
NP_001 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-
240 250 260 270 280 290
100 110 120 130 140 150
pF1KE0 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMN
:..:::: :::.. : . :: ::.: : :: .. ::.::: :.. : : .:. ::
NP_001 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN
300 310 320 330 340 350
160 170 180 190 200
pF1KE0 GMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEEATLR
: ... . ..:. . ..::.:
NP_001 GRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVP
360 370 380 390 400 410
>>NP_112241 (OMIM: 604680) polyadenylate-binding protein (631 aa)
initn: 1081 init1: 965 opt: 965 Z-score: 793.7 bits: 155.4 E(85289): 1.8e-37
Smith-Waterman score: 965; 73.3% identity (89.2% similar) in 195 aa overlap (2-196:11-205)
10 20 30 40 50
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ
::::::::::.:::::::::::::::::::::::: :: : .:::::.:
NP_112 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFS
. ::..::.:.:::::::.::::::::::::::::::::.:.::: :.:.:::::. :
NP_112 HTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE
::::::::.:.:::.: ::::::::. .:.::::: ::::.:: ::.:::.:::.::::
NP_112 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKERE
130 140 150 160 170 180
180 190 200
pF1KE0 AERGAWARQSTSADVKDFEEDTDEEATLR
:: :: :.. .. .:.: :: :.:
NP_112 AELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
190 200 210 220 230 240
>--
initn: 410 init1: 175 opt: 270 Z-score: 238.1 bits: 52.6 E(85289): 1.6e-06
Smith-Waterman score: 270; 29.2% identity (60.2% similar) in 171 aa overlap (18-172:207-376)
10 20 30 40
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAY
: . :. :: ::... :. . .: :...
NP_112 KEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGF
180 190 200 210 220 230
50 60 70 80 90
pF1KE0 VNYQQPVDAKRALETLNFDVIKGRPVRIMWSQ----RDPSLRKS------------GVGN
:.... ::..:.. .: ..:. . . .: :. :... : :
NP_112 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN
240 250 260 270 280 290
100 110 120 130 140 150
pF1KE0 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG
...::: ::.. : . :: ::.: : :: . ::.::: :.. : : .:. :::
NP_112 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG
300 310 320 330 340 350
160 170 180 190 200
pF1KE0 MFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEEATLR
.. . ..:. . ..::.:
NP_112 RIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAA
360 370 380 390 400 410
>>NP_543022 (OMIM: 300407) polyadenylate-binding protein (382 aa)
initn: 761 init1: 761 opt: 782 Z-score: 649.2 bits: 127.9 E(85289): 2e-29
Smith-Waterman score: 782; 59.7% identity (81.6% similar) in 196 aa overlap (2-196:18-213)
10 20 30 40
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLG
:.:::::: :.::: :::.:: ::::. ::::: .:: ::
NP_543 MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 YAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNK
:.:::.. :.::. ::.:.:::.:.:.: :.:::: : ::::::::.::::: :.:::.
NP_543 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 ALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRF
::. .::::::::::::.::..: :::..:::.. .:.::: :::. :: :...::::
NP_543 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
130 140 150 160 170 180
170 180 190 200
pF1KE0 KSHKEREAERGAWARQS-TSADVKDFEEDTDEEATLR
: .:: :: . : . :.. ::.. .: :.:
NP_543 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG
190 200 210 220 230 240
NP_543 FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
250 260 270 280 290 300
>>NP_005841 (OMIM: 154400,605593) splicing factor 3B sub (424 aa)
initn: 318 init1: 148 opt: 359 Z-score: 310.7 bits: 65.4 E(85289): 1.4e-10
Smith-Waterman score: 359; 35.6% identity (68.1% similar) in 188 aa overlap (2-184:13-197)
10 20 30 40
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVN
:..::: : .:.: .:.: : :::... .. .:..: . ::..:.
NP_005 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 YQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVG-NVFIKNLGKTIDNKALYN
. . :: :.. .:. . :.:.:. .. . .. :: :.:: :: ::.: ::.
NP_005 FLSEEDADYAIKIMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDPEIDEKLLYD
70 80 90 100 110
110 120 130 140 150 160
pF1KE0 IFSAFGNILSC-KVACD-EKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK
::::: ::. :. : . : :::.:..: . .... ::..:::..: : : :. .
NP_005 TFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS-YA
120 130 140 150 160 170
170 180 190 200
pF1KE0 SHKEREAER-GAWARQSTSADVKDFEEDTDEEATLR
.:. ..:: :. :.. .:
NP_005 FKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGM
180 190 200 210 220 230
>>XP_016869913 (OMIM: 601673) PREDICTED: ELAV-like prote (346 aa)
initn: 280 init1: 152 opt: 293 Z-score: 258.6 bits: 55.5 E(85289): 1.1e-07
Smith-Waterman score: 293; 35.1% identity (67.5% similar) in 151 aa overlap (3-151:40-188)
10 20 30
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIR
.: :. : ..:. : :. : : : .
XP_016 TCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 ICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNV
. ::::: .::::..::: .: ::..:..::: .. . ... ... :: . .:.
XP_016 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 FIKNLGKTIDNKALYNIFSAFGNILSCKVACDE-KG-PKGYGFVHFQKQESAERAIDVMN
....: ::. .: : ..:: .: :.. .. :. : .: ::..:.:. ::.:: .:
XP_016 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN
130 140 150 160 170 180
160 170 180 190 200
pF1KE0 GMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEEATLR
:
XP_016 GQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGM
190 200 210 220 230 240
>>NP_001164666 (OMIM: 601673) ELAV-like protein 2 isofor (346 aa)
initn: 280 init1: 152 opt: 293 Z-score: 258.6 bits: 55.5 E(85289): 1.1e-07
Smith-Waterman score: 293; 35.1% identity (67.5% similar) in 151 aa overlap (3-151:40-188)
10 20 30
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIR
.: :. : ..:. : :. : : : .
NP_001 TCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 ICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNV
. ::::: .::::..::: .: ::..:..::: .. . ... ... :: . .:.
NP_001 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 FIKNLGKTIDNKALYNIFSAFGNILSCKVACDE-KG-PKGYGFVHFQKQESAERAIDVMN
....: ::. .: : ..:: .: :.. .. :. : .: ::..:.:. ::.:: .:
NP_001 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN
130 140 150 160 170 180
160 170 180 190 200
pF1KE0 GMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEEATLR
:
NP_001 GQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGM
190 200 210 220 230 240
200 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:33:35 2016 done: Wed Nov 2 19:33:36 2016
Total Scan time: 4.640 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]