Result of FASTA (ccds) for
pF1KE0626
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0626, 372 aa
1>>>pF1KE0626 372 - 372 aa - 372 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5789+/-0.00108; mu= 10.3772+/- 0.065
mean_var=100.2177+/-19.672, 0's: 0 Z-trim(106.1): 84 B-trim: 53 in 1/49
Lambda= 0.128116
statistics sampled from 8721 (8795) to 8721 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.27), width: 16
Scan time: 2.820
The best scores are: opt bits E(32554)
CCDS33485.1 PARD6B gene_id:84612|Hs108|chr20 ( 372) 2421 458.2 5.4e-129
CCDS12022.1 PARD6G gene_id:84552|Hs108|chr18 ( 376) 1331 256.7 2.4e-68
CCDS10843.1 PARD6A gene_id:50855|Hs108|chr16 ( 346) 1096 213.2 2.7e-55
CCDS45514.1 PARD6A gene_id:50855|Hs108|chr16 ( 345) 1085 211.2 1.1e-54
>>CCDS33485.1 PARD6B gene_id:84612|Hs108|chr20 (372 aa)
initn: 2421 init1: 2421 opt: 2421 Z-score: 2429.3 bits: 458.2 E(32554): 5.4e-129
Smith-Waterman score: 2421; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KE0 MNRSHRHGAGSGCLGTMEVKSKFGAEFRRFSLERSKPGKFEEFYGLLQHVHKIPNVDVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MNRSHRHGAGSGCLGTMEVKSKFGAEFRRFSLERSKPGKFEEFYGLLQHVHKIPNVDVLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GYADIHGDLLPINNDDNYHKAVSTANPLLRIFIQKKEEADYSAFGTDTLIKKKNVLTNVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GYADIHGDLLPINNDDNYHKAVSTANPLLRIFIQKKEEADYSAFGTDTLIKKKNVLTNVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RPDNHRKKPHIVISMPQDFRPVSSIIDVDILPETHRRVRLYKYGTEKPLGFYIRDGSSVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RPDNHRKKPHIVISMPQDFRPVSSIIDVDILPETHRRVRLYKYGTEKPLGFYIRDGSSVR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NLIITVRPANQRNNVVRNSRTSGSSGQSTDNSLLGYPQQIEPSFEPEDEDSEEDDIIIED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NLIITVRPANQRNNVVRNSRTSGSSGQSTDNSLLGYPQQIEPSFEPEDEDSEEDDIIIED
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 NGVPQQIPKAVPNTESLESLTQIELSFESGQNGFIPSNEVSLAAIASSSNTEFETHAPDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NGVPQQIPKAVPNTESLESLTQIELSFESGQNGFIPSNEVSLAAIASSSNTEFETHAPDQ
310 320 330 340 350 360
370
pF1KE0 KLLEEDGTIITL
::::::::::::
CCDS33 KLLEEDGTIITL
370
>>CCDS12022.1 PARD6G gene_id:84552|Hs108|chr18 (376 aa)
initn: 1306 init1: 802 opt: 1331 Z-score: 1340.4 bits: 256.7 E(32554): 2.4e-68
Smith-Waterman score: 1331; 64.2% identity (86.4% similar) in 316 aa overlap (1-309:1-314)
10 20 30 40 50
pF1KE0 MNRS-HRHGAGS--GCLGTMEVKSKFGAEFRRFSLERSKPGKFEEFYGLLQHVHKIPNVD
:::: :. . : ...:::::::::::::::.: ::::::.:: :. :.:.: : :
CCDS12 MNRSFHKSQTLRFYDC-SAVEVKSKFGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSD
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 VLVGYADIHGDLLPINNDDNYHKAVSTANPLLRIFIQKKEEADYSAFGTDTLIKKKNVLT
: .::::.::::::::::::. ::::.::::::.::::.:::. ...:. .: ... .:
CCDS12 VTIGYADVHGDLLPINNDDNFCKAVSSANPLLRVFIQKREEAERGSLGAGSLCRRRRAL-
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 NVLRPDNHRKKPHIVISMPQDFRPVSSIIDVDILPETHRRVRLYKYGTEKPLGFYIRDGS
..:: .. :.. :. :..:.::::::::::::..:::::::::...: :::::::::::.
CCDS12 GALRDEGPRRRAHLDIGLPRDFRPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDGA
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 SVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA
:::::::::::::::::::.::::::.:::::::::::::::::::.::.::::::::::
CCDS12 SVRVTPHGLEKVPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 NSRNLIITVRPANQRNNVVRNSRTSGSSGQSTDNS--LLGYPQ-QIEPSFEPEDEDSEED
::.:::.::.::::::::::..:. :::: .:.. ..: : .. .:.:.. .:.::
CCDS12 NSHNLIVTVKPANQRNNVVRGGRALGSSGPPSDGTAGFVGPPAPRVLQNFHPDEAESDED
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 -DIIIEDNGVPQQIPKAVPNTESLESLTQIELSFESGQNGFIPSNEVSLAAIASSSNTEF
:..:: . : . :.
CCDS12 NDVVIEGTLEPARPPQTPGAPAGSLSRVNGAGLAQRLQRDLALDGGLQRLLSSLRADPRH
300 310 320 330 340 350
>>CCDS10843.1 PARD6A gene_id:50855|Hs108|chr16 (346 aa)
initn: 1046 init1: 715 opt: 1096 Z-score: 1106.2 bits: 213.2 E(32554): 2.7e-55
Smith-Waterman score: 1111; 57.7% identity (78.5% similar) in 317 aa overlap (1-308:1-303)
10 20 30 40 50 60
pF1KE0 MNRSHRHGAGSGCLGTMEVKSKFGAEFRRFSLERSKPGKFEEFYGLLQHVHKIPNVDVLV
: : .: : : . .:::::: ::::::.: :.. . :.:: ::. ::.::..:::.
CCDS10 MARPQRTPARSPD-SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLL
10 20 30 40 50
70 80 90 100 110
pF1KE0 GYADIHGDLLPINNDDNYHKAVSTANPLLRIFIQKKEEADYS--AFGTDTLIKKKNVLTN
::.: ::::::..:::. :.:.... : ::...::. ::: : ::....: ..:. :
CCDS10 GYTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKRAEADSSGLAFASNSLQRRKKGL--
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 VLRPDNH-RKKPHIVISMPQDFRPVSSIIDVDILPETHRRVRLYKYGTEKPLGFYIRDGS
.::: : .: ..::.::::: :::.::::.::::::::::.:.:...:::::::::
CCDS10 LLRPVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGM
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 SVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA
::::.:.:::.:::::::::: ::::.:::::::.::.::::::::.::.::::::::.:
CCDS10 SVRVAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 NSRNLIITVRPANQRNNVVRNSRTSGSSGQSTDNSLLGYPQQIEPSFEPEDEDSEEDDII
::.:::.::.:::::::::: :.::. : : : :: : :.. .:..
CCDS10 NSHNLIVTVKPANQRNNVVR-----GASGRLTGPPSAG-PGPAEP-----DSDDDSSDLV
240 250 260 270 280
300 310 320 330 340 350
pF1KE0 IED------NGVPQQIPKAVPNTESLESLTQIELSFESGQNGFIPSNEVSLAAIASSSNT
::. ::. : :
CCDS10 IENRQPPSSNGLSQGPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRGDGSGFSL
290 300 310 320 330 340
>>CCDS45514.1 PARD6A gene_id:50855|Hs108|chr16 (345 aa)
initn: 1007 init1: 1007 opt: 1085 Z-score: 1095.3 bits: 211.2 E(32554): 1.1e-54
Smith-Waterman score: 1100; 57.7% identity (78.5% similar) in 317 aa overlap (1-308:1-302)
10 20 30 40 50 60
pF1KE0 MNRSHRHGAGSGCLGTMEVKSKFGAEFRRFSLERSKPGKFEEFYGLLQHVHKIPNVDVLV
: : .: : : . .:::::: ::::::.: :.. . :.:: ::. ::.::..:::.
CCDS45 MARPQRTPARSPD-SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLL
10 20 30 40 50
70 80 90 100 110
pF1KE0 GYADIHGDLLPINNDDNYHKAVSTANPLLRIFIQKKEEADYS--AFGTDTLIKKKNVLTN
::.: ::::::..:::. :.:.... : ::...::.: :: : ::....: ..:. :
CCDS45 GYTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKRE-ADSSGLAFASNSLQRRKKGL--
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 VLRPDNH-RKKPHIVISMPQDFRPVSSIIDVDILPETHRRVRLYKYGTEKPLGFYIRDGS
.::: : .: ..::.::::: :::.::::.::::::::::.:.:...:::::::::
CCDS45 LLRPVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGM
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 SVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA
::::.:.:::.:::::::::: ::::.:::::::.::.::::::::.::.::::::::.:
CCDS45 SVRVAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 NSRNLIITVRPANQRNNVVRNSRTSGSSGQSTDNSLLGYPQQIEPSFEPEDEDSEEDDII
::.:::.::.:::::::::: :.::. : : : :: : :.. .:..
CCDS45 NSHNLIVTVKPANQRNNVVR-----GASGRLTGPPSAG-PGPAEP-----DSDDDSSDLV
240 250 260 270 280
300 310 320 330 340 350
pF1KE0 IED------NGVPQQIPKAVPNTESLESLTQIELSFESGQNGFIPSNEVSLAAIASSSNT
::. ::. : :
CCDS45 IENRQPPSSNGLSQGPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRGDGSGFSL
290 300 310 320 330 340
372 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 20:17:37 2016 done: Sat Nov 5 20:17:37 2016
Total Scan time: 2.820 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]