Result of FASTA (omim) for
pF1KE0620
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0620, 360 aa
1>>>pF1KE0620 360 - 360 aa - 360 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.0152+/-0.000473; mu= 26.9079+/- 0.030
mean_var=202.8459+/-46.819, 0's: 0 Z-trim(114.1): 421 B-trim: 0 in 0/50
Lambda= 0.090052
statistics sampled from 23198 (23727) to 23198 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.278), width: 16
Scan time: 6.330
The best scores are: opt bits E(85289)
NP_115657 (OMIM: 603458) ELAV-like protein 3 isofo ( 360) 2351 318.5 1.4e-86
NP_001411 (OMIM: 603458) ELAV-like protein 3 isofo ( 367) 2327 315.4 1.3e-85
XP_011526080 (OMIM: 603458) PREDICTED: ELAV-like p ( 366) 2308 313.0 6.9e-85
NP_001138248 (OMIM: 168360) ELAV-like protein 4 is ( 366) 1950 266.4 6.9e-71
NP_001138249 (OMIM: 168360) ELAV-like protein 4 is ( 369) 1950 266.5 7e-71
XP_016856027 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 1945 265.8 1.1e-70
NP_001138246 (OMIM: 168360) ELAV-like protein 4 is ( 366) 1944 265.7 1.2e-70
NP_001311143 (OMIM: 168360) ELAV-like protein 4 is ( 365) 1943 265.5 1.3e-70
NP_001311141 (OMIM: 168360) ELAV-like protein 4 is ( 365) 1943 265.5 1.3e-70
NP_001281277 (OMIM: 168360) ELAV-like protein 4 is ( 371) 1943 265.6 1.3e-70
XP_016869906 (OMIM: 601673) PREDICTED: ELAV-like p ( 373) 1943 265.6 1.3e-70
NP_001138247 (OMIM: 168360) ELAV-like protein 4 is ( 402) 1943 265.6 1.3e-70
XP_016869904 (OMIM: 601673) PREDICTED: ELAV-like p ( 376) 1942 265.4 1.4e-70
XP_016869898 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 1942 265.5 1.5e-70
XP_011516076 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 1942 265.5 1.5e-70
XP_016869897 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 1942 265.5 1.5e-70
XP_016869899 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 1942 265.5 1.5e-70
XP_016869903 (OMIM: 601673) PREDICTED: ELAV-like p ( 387) 1938 264.9 2.1e-70
XP_016869902 (OMIM: 601673) PREDICTED: ELAV-like p ( 387) 1938 264.9 2.1e-70
XP_016856028 (OMIM: 168360) PREDICTED: ELAV-like p ( 359) 1936 264.6 2.4e-70
XP_011516085 (OMIM: 601673) PREDICTED: ELAV-like p ( 374) 1931 264.0 3.9e-70
XP_006716798 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 1930 263.9 4.3e-70
XP_011516082 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 1930 263.9 4.3e-70
XP_006716797 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 1930 263.9 4.3e-70
XP_011516081 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 1930 263.9 4.3e-70
XP_011516080 (OMIM: 601673) PREDICTED: ELAV-like p ( 392) 1930 263.9 4.3e-70
XP_016869901 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 1926 263.4 6.2e-70
XP_016869900 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 1926 263.4 6.2e-70
XP_016869908 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1924 263.1 7.2e-70
XP_016869911 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1924 263.1 7.2e-70
NP_004423 (OMIM: 601673) ELAV-like protein 2 isofo ( 359) 1924 263.1 7.2e-70
XP_016869912 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1924 263.1 7.2e-70
XP_016869909 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1924 263.1 7.2e-70
XP_016869910 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1924 263.1 7.2e-70
XP_005251451 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_005251452 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_016869907 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_011516087 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_006716799 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_011516088 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_005251450 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_011516086 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_011539195 (OMIM: 168360) PREDICTED: ELAV-like p ( 380) 1342 187.5 4.2e-47
NP_001311137 (OMIM: 168360) ELAV-like protein 4 is ( 383) 1342 187.5 4.2e-47
XP_006710474 (OMIM: 168360) PREDICTED: ELAV-like p ( 393) 1337 186.9 6.7e-47
NP_068771 (OMIM: 168360) ELAV-like protein 4 isofo ( 380) 1336 186.7 7.2e-47
XP_011539196 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 1335 186.6 7.9e-47
XP_011539197 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 1335 186.6 7.9e-47
NP_001311142 (OMIM: 168360) ELAV-like protein 4 is ( 385) 1335 186.6 8e-47
XP_011539191 (OMIM: 168360) PREDICTED: ELAV-like p ( 416) 1335 186.7 8.2e-47
>>NP_115657 (OMIM: 603458) ELAV-like protein 3 isoform 2 (360 aa)
initn: 2351 init1: 2351 opt: 2351 Z-score: 1675.2 bits: 318.5 E(85289): 1.4e-86
Smith-Waterman score: 2351; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)
10 20 30 40 50 60
pF1KE0 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 NLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA
310 320 330 340 350 360
>>NP_001411 (OMIM: 603458) ELAV-like protein 3 isoform 1 (367 aa)
initn: 1618 init1: 1618 opt: 2327 Z-score: 1658.3 bits: 315.4 E(85289): 1.3e-85
Smith-Waterman score: 2327; 98.1% identity (98.1% similar) in 367 aa overlap (1-360:1-367)
10 20 30 40 50 60
pF1KE0 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
190 200 210 220 230 240
250 260 270 280 290
pF1KE0 NLLNMAYGVK-------RFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL
:::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_001 NLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE0 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK
310 320 330 340 350 360
360
pF1KE0 TSKQHKA
:::::::
NP_001 TSKQHKA
>>XP_011526080 (OMIM: 603458) PREDICTED: ELAV-like prote (366 aa)
initn: 1594 init1: 1594 opt: 2308 Z-score: 1645.0 bits: 313.0 E(85289): 6.9e-85
Smith-Waterman score: 2308; 97.8% identity (97.8% similar) in 367 aa overlap (1-360:1-366)
10 20 30 40 50 60
pF1KE0 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVT-ILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
180 190 200 210 220 230
250 260 270 280 290
pF1KE0 NLLNMAYGVK-------RFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL
:::::::::: :::::::::::::::::::::::::::::::::::::::::::
XP_011 NLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK
300 310 320 330 340 350
360
pF1KE0 TSKQHKA
:::::::
XP_011 TSKQHKA
360
>>NP_001138248 (OMIM: 168360) ELAV-like protein 4 isofor (366 aa)
initn: 2109 init1: 1387 opt: 1950 Z-score: 1393.6 bits: 266.4 E(85289): 6.9e-71
Smith-Waterman score: 1950; 82.2% identity (93.7% similar) in 366 aa overlap (4-360:3-366)
10 20 30 40 50
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLPQNMT
::...:: ::..::. ::. : .:. :...::::::::::::::::::
NP_001 MEQIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLPQNMT
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIK
:.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::::::
NP_001 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI
:::::::::::::::::::::::::.:::.::::::::::::::::::::::::::::::
NP_001 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 RFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLH
:::::::::::::::::::: ::.::::::::::::::..::::..:::: ::: ::::
NP_001 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLH
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 HQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADES
::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::..:::
NP_001 HQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPDSDES
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 VLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS
::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::::::
NP_001 VLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS
300 310 320 330 340 350
360
pF1KE0 FKTSKQHKA
:::.: ::.
NP_001 FKTNKAHKS
360
>>NP_001138249 (OMIM: 168360) ELAV-like protein 4 isofor (369 aa)
initn: 2109 init1: 1387 opt: 1950 Z-score: 1393.6 bits: 266.5 E(85289): 7e-71
Smith-Waterman score: 1950; 82.2% identity (93.7% similar) in 366 aa overlap (4-360:6-369)
10 20 30 40
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLPQN
::...:: ::..::. ::. : .:. :...::::::::::::::::
NP_001 MRLKNQIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLPQN
10 20 30 40 50
50 60 70 80 90 100
pF1KE0 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT
:::.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::::
NP_001 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE0 IKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVG
:::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::::
NP_001 IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE0 FIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGP
:::::::::::::::::::::: ::.::::::::::::::..::::..:::: ::: ::
NP_001 FIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGP
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE0 LHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEAD
::::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::..:
NP_001 LHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPDSD
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE0 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ
::::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::::
NP_001 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
300 310 320 330 340 350
350 360
pF1KE0 VSFKTSKQHKA
:::::.: ::.
NP_001 VSFKTNKAHKS
360
>>XP_016856027 (OMIM: 168360) PREDICTED: ELAV-like prote (379 aa)
initn: 2104 init1: 1387 opt: 1945 Z-score: 1390.0 bits: 265.8 E(85289): 1.1e-70
Smith-Waterman score: 1945; 82.0% identity (93.7% similar) in 366 aa overlap (4-360:16-379)
10 20 30
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKT
.:...:: ::..::. ::. : .:. :...::::::
XP_016 MFEISRTLNAALLNNEIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKT
10 20 30 40 50
40 50 60 70 80 90
pF1KE0 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT
:::::::::::::.::.:::::::.::::::::::::::::::::::: ::.::.:::::
XP_016 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE0 LNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVD
::::.::::::::::::::::::::::::::::::::.:::.::::::::::::::::::
XP_016 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE0 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLY
:::::::::::::::::::::::::::::::: ::.::::::::::::::..::::..::
XP_016 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLY
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE0 QSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCI
:: ::: ::::::.:::::::::::::::::::::.::::..:.:... : . :.::::
XP_016 QSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCI
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE0 FVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN
:::::::..:::::::::::::::.::::::::.::::::::::::::::::::::::::
XP_016 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN
300 310 320 330 340 350
340 350 360
pF1KE0 GYRLGERVLQVSFKTSKQHKA
:::::.:::::::::.: ::.
XP_016 GYRLGDRVLQVSFKTNKAHKS
360 370
>>NP_001138246 (OMIM: 168360) ELAV-like protein 4 isofor (366 aa)
initn: 2103 init1: 1387 opt: 1944 Z-score: 1389.4 bits: 265.7 E(85289): 1.2e-70
Smith-Waterman score: 1944; 81.5% identity (93.8% similar) in 368 aa overlap (2-360:1-366)
10 20 30 40 50
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLPQNMT
...:...:: ::..::. ::. : .:. :...::::::::::::::::::
NP_001 MVMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLPQNMT
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIK
:.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::::::
NP_001 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI
:::::::::::::::::::::::::.:::.::::::::::::::::::::::::::::::
NP_001 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 RFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLH
:::::::::::::::::::: ::.::::::::::::::..::::..:::: ::: ::::
NP_001 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLH
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 HQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADES
::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::..:::
NP_001 HQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPDSDES
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 VLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS
::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::::::
NP_001 VLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS
300 310 320 330 340 350
360
pF1KE0 FKTSKQHKA
:::.: ::.
NP_001 FKTNKAHKS
360
>>NP_001311143 (OMIM: 168360) ELAV-like protein 4 isofor (365 aa)
initn: 2102 init1: 1387 opt: 1943 Z-score: 1388.7 bits: 265.5 E(85289): 1.3e-70
Smith-Waterman score: 1943; 82.2% identity (93.7% similar) in 365 aa overlap (5-360:3-365)
10 20 30 40 50
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLPQNMT
:...:: ::..::. ::. : .:. :...::::::::::::::::::
NP_001 MMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLPQNMT
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIK
:.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::::::
NP_001 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI
:::::::::::::::::::::::::.:::.::::::::::::::::::::::::::::::
NP_001 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 RFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLH
:::::::::::::::::::: ::.::::::::::::::..::::..:::: ::: ::::
NP_001 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLH
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 HQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADES
::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::..:::
NP_001 HQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPDSDES
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 VLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS
::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::::::
NP_001 VLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS
300 310 320 330 340 350
360
pF1KE0 FKTSKQHKA
:::.: ::.
NP_001 FKTNKAHKS
360
>>NP_001311141 (OMIM: 168360) ELAV-like protein 4 isofor (365 aa)
initn: 2102 init1: 1387 opt: 1943 Z-score: 1388.7 bits: 265.5 E(85289): 1.3e-70
Smith-Waterman score: 1943; 82.2% identity (93.7% similar) in 365 aa overlap (5-360:3-365)
10 20 30 40 50
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLPQNMT
:...:: ::..::. ::. : .:. :...::::::::::::::::::
NP_001 MMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLPQNMT
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIK
:.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::::::
NP_001 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI
:::::::::::::::::::::::::.:::.::::::::::::::::::::::::::::::
NP_001 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 RFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLH
:::::::::::::::::::: ::.::::::::::::::..::::..:::: ::: ::::
NP_001 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLH
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 HQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADES
::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::..:::
NP_001 HQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPDSDES
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 VLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS
::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::::::
NP_001 VLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS
300 310 320 330 340 350
360
pF1KE0 FKTSKQHKA
:::.: ::.
NP_001 FKTNKAHKS
360
>>NP_001281277 (OMIM: 168360) ELAV-like protein 4 isofor (371 aa)
initn: 2102 init1: 1387 opt: 1943 Z-score: 1388.6 bits: 265.6 E(85289): 1.3e-70
Smith-Waterman score: 1943; 82.2% identity (93.7% similar) in 365 aa overlap (5-360:9-371)
10 20 30 40
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLP
:...:: ::..::. ::. : .:. :...::::::::::::::
NP_001 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLP
10 20 30 40 50
50 60 70 80 90 100
pF1KE0 QNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT
:::::.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::
NP_001 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE0 KTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRG
:::::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::
NP_001 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE0 VGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYA
:::::::::::::::::::::::: ::.::::::::::::::..::::..:::: :::
NP_001 VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE0 GPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPE
::::::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::.
NP_001 GPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPD
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE0 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERV
.:::::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::
NP_001 SDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV
300 310 320 330 340 350
350 360
pF1KE0 LQVSFKTSKQHKA
:::::::.: ::.
NP_001 LQVSFKTNKAHKS
360 370
360 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:55:24 2016 done: Wed Nov 2 19:55:25 2016
Total Scan time: 6.330 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]