Result of FASTA (ccds) for
pF1KE0620
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0620, 360 aa
1>>>pF1KE0620 360 - 360 aa - 360 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5945+/-0.00111; mu= 16.4843+/- 0.067
mean_var=138.3866+/-30.319, 0's: 0 Z-trim(107.2): 160 B-trim: 402 in 1/49
Lambda= 0.109025
statistics sampled from 9188 (9405) to 9188 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.289), width: 16
Scan time: 2.460
The best scores are: opt bits E(32554)
CCDS45978.1 ELAVL3 gene_id:1995|Hs108|chr19 ( 360) 2351 381.6 5.6e-106
CCDS32912.1 ELAVL3 gene_id:1995|Hs108|chr19 ( 367) 2327 377.9 7.7e-105
CCDS44138.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 366) 1950 318.6 5.4e-87
CCDS53315.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 369) 1950 318.6 5.5e-87
CCDS44140.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 366) 1944 317.6 1e-86
CCDS72788.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 371) 1943 317.5 1.2e-86
CCDS44139.2 ELAVL4 gene_id:1996|Hs108|chr1 ( 402) 1943 317.5 1.2e-86
CCDS6515.1 ELAVL2 gene_id:1993|Hs108|chr9 ( 359) 1924 314.5 9.2e-86
CCDS553.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 380) 1336 222.0 6.6e-58
CCDS81321.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 385) 1335 221.9 7.4e-58
CCDS55298.1 ELAVL2 gene_id:1993|Hs108|chr9 ( 346) 1234 205.9 4.2e-53
CCDS12193.1 ELAVL1 gene_id:1994|Hs108|chr19 ( 326) 991 167.7 1.3e-41
CCDS2213.1 RBMS1 gene_id:5937|Hs108|chr2 ( 406) 378 71.4 1.6e-12
CCDS33725.1 RBMS3 gene_id:27303|Hs108|chr3 ( 419) 367 69.6 5.3e-12
CCDS33726.1 RBMS3 gene_id:27303|Hs108|chr3 ( 420) 367 69.6 5.3e-12
CCDS54558.1 RBMS3 gene_id:27303|Hs108|chr3 ( 421) 367 69.6 5.3e-12
CCDS54557.1 RBMS3 gene_id:27303|Hs108|chr3 ( 433) 367 69.7 5.4e-12
CCDS33724.1 RBMS3 gene_id:27303|Hs108|chr3 ( 437) 367 69.7 5.5e-12
CCDS8923.1 RBMS2 gene_id:5939|Hs108|chr12 ( 407) 366 69.5 5.8e-12
>>CCDS45978.1 ELAVL3 gene_id:1995|Hs108|chr19 (360 aa)
initn: 2351 init1: 2351 opt: 2351 Z-score: 2016.2 bits: 381.6 E(32554): 5.6e-106
Smith-Waterman score: 2351; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)
10 20 30 40 50 60
pF1KE0 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA
310 320 330 340 350 360
>>CCDS32912.1 ELAVL3 gene_id:1995|Hs108|chr19 (367 aa)
initn: 1618 init1: 1618 opt: 2327 Z-score: 1995.7 bits: 377.9 E(32554): 7.7e-105
Smith-Waterman score: 2327; 98.1% identity (98.1% similar) in 367 aa overlap (1-360:1-367)
10 20 30 40 50 60
pF1KE0 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
190 200 210 220 230 240
250 260 270 280 290
pF1KE0 NLLNMAYGVK-------RFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL
:::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS32 NLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE0 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK
310 320 330 340 350 360
360
pF1KE0 TSKQHKA
:::::::
CCDS32 TSKQHKA
>>CCDS44138.1 ELAVL4 gene_id:1996|Hs108|chr1 (366 aa)
initn: 2109 init1: 1387 opt: 1950 Z-score: 1675.2 bits: 318.6 E(32554): 5.4e-87
Smith-Waterman score: 1950; 82.2% identity (93.7% similar) in 366 aa overlap (4-360:3-366)
10 20 30 40 50
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLPQNMT
::...:: ::..::. ::. : .:. :...::::::::::::::::::
CCDS44 MEQIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLPQNMT
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIK
:.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::::::
CCDS44 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI
:::::::::::::::::::::::::.:::.::::::::::::::::::::::::::::::
CCDS44 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 RFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLH
:::::::::::::::::::: ::.::::::::::::::..::::..:::: ::: ::::
CCDS44 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLH
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 HQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADES
::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::..:::
CCDS44 HQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPDSDES
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 VLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS
::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::::::
CCDS44 VLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS
300 310 320 330 340 350
360
pF1KE0 FKTSKQHKA
:::.: ::.
CCDS44 FKTNKAHKS
360
>>CCDS53315.1 ELAVL4 gene_id:1996|Hs108|chr1 (369 aa)
initn: 2109 init1: 1387 opt: 1950 Z-score: 1675.2 bits: 318.6 E(32554): 5.5e-87
Smith-Waterman score: 1950; 82.2% identity (93.7% similar) in 366 aa overlap (4-360:6-369)
10 20 30 40
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLPQN
::...:: ::..::. ::. : .:. :...::::::::::::::::
CCDS53 MRLKNQIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLPQN
10 20 30 40 50
50 60 70 80 90 100
pF1KE0 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT
:::.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::::
CCDS53 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE0 IKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVG
:::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::::
CCDS53 IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE0 FIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGP
:::::::::::::::::::::: ::.::::::::::::::..::::..:::: ::: ::
CCDS53 FIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGP
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE0 LHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEAD
::::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::..:
CCDS53 LHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPDSD
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE0 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ
::::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::::
CCDS53 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
300 310 320 330 340 350
350 360
pF1KE0 VSFKTSKQHKA
:::::.: ::.
CCDS53 VSFKTNKAHKS
360
>>CCDS44140.1 ELAVL4 gene_id:1996|Hs108|chr1 (366 aa)
initn: 2103 init1: 1387 opt: 1944 Z-score: 1670.1 bits: 317.6 E(32554): 1e-86
Smith-Waterman score: 1944; 81.5% identity (93.8% similar) in 368 aa overlap (2-360:1-366)
10 20 30 40 50
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLPQNMT
...:...:: ::..::. ::. : .:. :...::::::::::::::::::
CCDS44 MVMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLPQNMT
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIK
:.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::::::
CCDS44 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI
:::::::::::::::::::::::::.:::.::::::::::::::::::::::::::::::
CCDS44 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 RFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLH
:::::::::::::::::::: ::.::::::::::::::..::::..:::: ::: ::::
CCDS44 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLH
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 HQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADES
::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::..:::
CCDS44 HQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPDSDES
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 VLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS
::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::::::
CCDS44 VLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS
300 310 320 330 340 350
360
pF1KE0 FKTSKQHKA
:::.: ::.
CCDS44 FKTNKAHKS
360
>>CCDS72788.1 ELAVL4 gene_id:1996|Hs108|chr1 (371 aa)
initn: 2102 init1: 1387 opt: 1943 Z-score: 1669.2 bits: 317.5 E(32554): 1.2e-86
Smith-Waterman score: 1943; 82.2% identity (93.7% similar) in 365 aa overlap (5-360:9-371)
10 20 30 40
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLP
:...:: ::..::. ::. : .:. :...::::::::::::::
CCDS72 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLP
10 20 30 40 50
50 60 70 80 90 100
pF1KE0 QNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT
:::::.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::
CCDS72 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE0 KTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRG
:::::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::
CCDS72 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE0 VGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYA
:::::::::::::::::::::::: ::.::::::::::::::..::::..:::: :::
CCDS72 VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE0 GPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPE
::::::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::.
CCDS72 GPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPD
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE0 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERV
.:::::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::
CCDS72 SDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV
300 310 320 330 340 350
350 360
pF1KE0 LQVSFKTSKQHKA
:::::::.: ::.
CCDS72 LQVSFKTNKAHKS
360 370
>>CCDS44139.2 ELAVL4 gene_id:1996|Hs108|chr1 (402 aa)
initn: 2102 init1: 1387 opt: 1943 Z-score: 1668.8 bits: 317.5 E(32554): 1.2e-86
Smith-Waterman score: 1943; 82.2% identity (93.7% similar) in 365 aa overlap (5-360:40-402)
10 20
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----G
:...:: ::..::. ::. : .
CCDS44 CVHGGKGLTDMRLLLLREIVINESRNCSFMIISTMEPQVSNGPTSNTSNGPSSNNRNCPS
10 20 30 40 50 60
30 40 50 60 70 80
pF1KE0 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV
:. :...:::::::::::::::::::.::.:::::::.:::::::::::::::::::::
CCDS44 PMQ-TGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE0 NYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF
:: ::.::.:::::::::.::::::::::::::::::::::::::::::::.:::.::::
CCDS44 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE0 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN
:::::::::::::::::::::::::::::::::::::::::::::: ::.::::::::::
CCDS44 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANN
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE0 PSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAG
::::..::::..:::: ::: ::::::.:::::::::::::::::::::.::::..:.:
CCDS44 PSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVG
250 260 270 280 290 300
270 280 290 300 310 320
pF1KE0 VGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTM
... : . :.:::::::::::..:::::::::::::::.::::::::.::::::::::::
CCDS44 MNIPGHT-GTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTM
310 320 330 340 350 360
330 340 350 360
pF1KE0 TNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA
:::::::::::::::::::.:::::::::.: ::.
CCDS44 TNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS
370 380 390 400
>>CCDS6515.1 ELAVL2 gene_id:1993|Hs108|chr9 (359 aa)
initn: 2084 init1: 1344 opt: 1924 Z-score: 1653.2 bits: 314.5 E(32554): 9.2e-86
Smith-Waterman score: 1924; 81.7% identity (92.2% similar) in 360 aa overlap (9-360:1-359)
10 20 30 40 50
pF1KE0 MVTQILGAMESQVGGGPAGPALPNGPLLGTN--------GATDDSKTNLIVNYLPQNMTQ
::.:...::. ::: .: : :.:::::::::::::::::
CCDS65 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQ
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV
.:.::::::::.::::::::::::::::::::::: ::.::.:::::::::.::::::::
CCDS65 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIR
::::::::::::::::::::::::.:::.::::::::::::::::::::::.::::::::
CCDS65 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHH
::::::::::::::::::: ::.:::::::::::::::.::.:..:::: ::: ::: .
CCDS65 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 QTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESV
:.::::::::::::::::::::..::::..:::... : :.:::::::::.:.::::.
CCDS65 QAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHP-GTGWCIFVYNLAPDADESI
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSF
:::.::::::::::::::::.:::::::::::::::::::::::::::::::.:::::::
CCDS65 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF
300 310 320 330 340 350
360
pF1KE0 KTSKQHKA
::.: :::
CCDS65 KTNKTHKA
>>CCDS553.1 ELAVL4 gene_id:1996|Hs108|chr1 (380 aa)
initn: 2097 init1: 1307 opt: 1336 Z-score: 1153.1 bits: 222.0 E(32554): 6.6e-58
Smith-Waterman score: 1906; 78.5% identity (90.3% similar) in 382 aa overlap (2-360:1-380)
10 20 30 40 50
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLPQNMT
...:...:: ::..::. ::. : .:. :...::::::::::::::::::
CCDS55 MVMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLPQNMT
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIK
:.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::::::
CCDS55 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI
:::::::::::::::::::::::::.:::.::::::::::::::::::::::::::::::
CCDS55 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 RFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLH
:::::::::::::::::::: ::.::::::::::::::..::::..:::: ::: ::::
CCDS55 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLH
180 190 200 210 220 230
240 250 260 270
pF1KE0 HQTQRFRLDNLLNMAYGVKR--------------FSPIAIDGMSGLAGVGLSGGAAGAGW
::.::::::::::::::::: ::::.::::..:.:... : . :.::
CCDS55 HQAQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHT-GTGW
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE0 CIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS
:::::::::..:::::::::::::::.::::::::.::::::::::::::::::::::::
CCDS55 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS
300 310 320 330 340 350
340 350 360
pF1KE0 LNGYRLGERVLQVSFKTSKQHKA
:::::::.:::::::::.: ::.
CCDS55 LNGYRLGDRVLQVSFKTNKAHKS
360 370 380
>>CCDS81321.1 ELAVL4 gene_id:1996|Hs108|chr1 (385 aa)
initn: 2096 init1: 1307 opt: 1335 Z-score: 1152.2 bits: 221.9 E(32554): 7.4e-58
Smith-Waterman score: 1905; 79.2% identity (90.2% similar) in 379 aa overlap (5-360:9-385)
10 20 30 40
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLP
:...:: ::..::. ::. : .:. :...::::::::::::::
CCDS81 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLP
10 20 30 40 50
50 60 70 80 90 100
pF1KE0 QNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT
:::::.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::
CCDS81 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE0 KTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRG
:::::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::
CCDS81 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE0 VGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYA
:::::::::::::::::::::::: ::.::::::::::::::..::::..:::: :::
CCDS81 VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP
180 190 200 210 220 230
230 240 250 260 270
pF1KE0 GPLHHQTQRFRLDNLLNMAYGVKR--------------FSPIAIDGMSGLAGVGLSGGAA
::::::.::::::::::::::::: ::::.::::..:.:... : .
CCDS81 GPLHHQAQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHT-
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE0 GAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAM
:.:::::::::::..:::::::::::::::.::::::::.::::::::::::::::::::
CCDS81 GTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAM
300 310 320 330 340 350
340 350 360
pF1KE0 AIASLNGYRLGERVLQVSFKTSKQHKA
:::::::::::.:::::::::.: ::.
CCDS81 AIASLNGYRLGDRVLQVSFKTNKAHKS
360 370 380
360 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:55:23 2016 done: Wed Nov 2 19:55:23 2016
Total Scan time: 2.460 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]