Result of FASTA (ccds) for
pF1KE0617
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0617, 183 aa
1>>>pF1KE0617 183 - 183 aa - 183 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8689+/-0.000969; mu= 5.8212+/- 0.058
mean_var=168.3009+/-35.957, 0's: 0 Z-trim(110.3): 127 B-trim: 0 in 0/50
Lambda= 0.098862
statistics sampled from 11327 (11474) to 11327 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.352), width: 16
Scan time: 1.900
The best scores are: opt bits E(32554)
CCDS30629.1 SRSF10 gene_id:10772|Hs108|chr1 ( 183) 1269 192.4 1.3e-49
CCDS53281.1 SRSF10 gene_id:10772|Hs108|chr1 ( 182) 1252 190.0 6.9e-49
CCDS30630.1 SRSF10 gene_id:10772|Hs108|chr1 ( 262) 1136 173.6 8.4e-44
CCDS53283.1 SRSF10 gene_id:10772|Hs108|chr1 ( 173) 1126 172.0 1.7e-43
CCDS53282.1 SRSF10 gene_id:10772|Hs108|chr1 ( 261) 1119 171.2 4.5e-43
CCDS72728.1 SRSF10 gene_id:10772|Hs108|chr1 ( 172) 1109 169.6 9.2e-43
CCDS53280.1 SRSF10 gene_id:10772|Hs108|chr1 ( 165) 998 153.7 5.2e-38
CCDS47459.1 SRSF12 gene_id:135295|Hs108|chr6 ( 261) 734 116.3 1.5e-26
>>CCDS30629.1 SRSF10 gene_id:10772|Hs108|chr1 (183 aa)
initn: 1269 init1: 1269 opt: 1269 Z-score: 1004.2 bits: 192.4 E(32554): 1.3e-49
Smith-Waterman score: 1269; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)
10 20 30 40 50 60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
130 140 150 160 170 180
pF1KE0 RKI
:::
CCDS30 RKI
>>CCDS53281.1 SRSF10 gene_id:10772|Hs108|chr1 (182 aa)
initn: 1005 init1: 1005 opt: 1252 Z-score: 991.2 bits: 190.0 E(32554): 6.9e-49
Smith-Waterman score: 1252; 99.5% identity (99.5% similar) in 183 aa overlap (1-183:1-182)
10 20 30 40 50 60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
CCDS53 SRSYERRRSRSRSFDYNYRRSYSPRN-RPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
130 140 150 160 170
pF1KE0 RKI
:::
CCDS53 RKI
180
>>CCDS30630.1 SRSF10 gene_id:10772|Hs108|chr1 (262 aa)
initn: 1133 init1: 1133 opt: 1136 Z-score: 899.8 bits: 173.6 E(32554): 8.4e-44
Smith-Waterman score: 1136; 92.8% identity (95.6% similar) in 181 aa overlap (1-181:1-180)
10 20 30 40 50 60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
:::::::::::::::::::::::::::::::::::::::::::: . : ..: . .:
CCDS30 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFK-HRNRSFSRSKSNS
130 140 150 160 170
pF1KE0 RKI
:
CCDS30 RSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSKSQS
180 190 200 210 220 230
>>CCDS53283.1 SRSF10 gene_id:10772|Hs108|chr1 (173 aa)
initn: 1126 init1: 1126 opt: 1126 Z-score: 894.3 bits: 172.0 E(32554): 1.7e-43
Smith-Waterman score: 1126; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)
10 20 30 40 50 60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
:::::::::::::::::::::::::::::::::::::::::::
CCDS53 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDSQVSKKKNER
130 140 150 160 170
pF1KE0 RKI
>>CCDS53282.1 SRSF10 gene_id:10772|Hs108|chr1 (261 aa)
initn: 1041 init1: 1005 opt: 1119 Z-score: 886.7 bits: 171.2 E(32554): 4.5e-43
Smith-Waterman score: 1119; 92.3% identity (95.0% similar) in 181 aa overlap (1-181:1-179)
10 20 30 40 50 60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
:::::::::::::::::::::::::: ::::::::::::::::: . : ..: . .:
CCDS53 SRSYERRRSRSRSFDYNYRRSYSPRN-RPTGRPRRSRSHSDNDRFK-HRNRSFSRSKSNS
130 140 150 160 170
pF1KE0 RKI
:
CCDS53 RSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSKSQS
180 190 200 210 220 230
>>CCDS72728.1 SRSF10 gene_id:10772|Hs108|chr1 (172 aa)
initn: 1005 init1: 1005 opt: 1109 Z-score: 881.2 bits: 169.6 E(32554): 9.2e-43
Smith-Waterman score: 1109; 99.4% identity (99.4% similar) in 163 aa overlap (1-163:1-162)
10 20 30 40 50 60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
:::::::::::::::::::::::::: ::::::::::::::::
CCDS72 SRSYERRRSRSRSFDYNYRRSYSPRN-RPTGRPRRSRSHSDNDSQVSKKKNER
130 140 150 160 170
pF1KE0 RKI
>>CCDS53280.1 SRSF10 gene_id:10772|Hs108|chr1 (165 aa)
initn: 998 init1: 998 opt: 998 Z-score: 795.9 bits: 153.7 E(32554): 5.2e-38
Smith-Waterman score: 1091; 89.6% identity (90.2% similar) in 183 aa overlap (1-183:1-165)
10 20 30 40 50 60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
::::::::::::::::::::::::: .::::::::::::::::
CCDS53 SRSYERRRSRSRSFDYNYRRSYSPR------------------KPNCSWNTQYSSAYYTS
130 140 150 160
pF1KE0 RKI
:::
CCDS53 RKI
>>CCDS47459.1 SRSF12 gene_id:135295|Hs108|chr6 (261 aa)
initn: 897 init1: 641 opt: 734 Z-score: 590.0 bits: 116.3 E(32554): 1.5e-26
Smith-Waterman score: 734; 65.2% identity (77.9% similar) in 181 aa overlap (1-175:1-180)
10 20 30 40 50 60
pF1KE0 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
:::: ::::::::.::::: :: :::::::::::::::::.:::::::::::::::::::
CCDS47 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSS--RYDDYDRYRR
::::::::.::.:::.:::::::::::::::::.:::.:: :. : : : . ::
CCDS47 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE-RHPCSPSDHRRSRSPSQRR
70 80 90 100 110
120 130 140 150 160 170
pF1KE0 SRSRS----YERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYS
.:::: .:::: : . . . : ::: .:: . :::: : .. : .....
CCDS47 TRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGR
120 130 140 150 160 170
180
pF1KE0 SAYYTSRKI
:
CCDS47 SRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQ
180 190 200 210 220 230
183 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 20:05:48 2016 done: Wed Nov 2 20:05:49 2016
Total Scan time: 1.900 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]