FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0611, 172 aa
  1>>>pF1KE0611 172 - 172 aa - 172 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9433+/-0.00123; mu= 6.8269+/- 0.073
 mean_var=240.2347+/-49.802, 0's: 0 Z-trim(110.2): 183  B-trim: 0 in 0/51
 Lambda= 0.082748
 statistics sampled from 11203 (11406) to 11203 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.35), width:  16
 Scan time:  1.540

The best scores are:                                      opt bits E(32554)
CCDS12059.1 CIRBP gene_id:1153|Hs108|chr19         ( 172) 1159 150.5 4.8e-37
CCDS74245.1 CIRBP gene_id:1153|Hs108|chr19         ( 297) 1133 147.7 5.7e-36
CCDS74244.1 CIRBP gene_id:1153|Hs108|chr19         ( 168) 1126 146.5 7.3e-36
CCDS14301.1 RBM3 gene_id:5935|Hs108|chrX           ( 157)  526 74.9 2.6e-14


>>CCDS12059.1 CIRBP gene_id:1153|Hs108|chr19              (172 aa)
 initn: 1159 init1: 1159 opt: 1159  Z-score: 778.5  bits: 150.5 E(32554): 4.8e-37
Smith-Waterman score: 1159; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)

               10        20        30        40        50        60
pF1KE0 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
               70        80        90       100       110       120

              130       140       150       160       170  
pF1KE0 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE
              130       140       150       160       170  

>>CCDS74245.1 CIRBP gene_id:1153|Hs108|chr19              (297 aa)
 initn: 1126 init1: 1126 opt: 1133  Z-score: 759.3  bits: 147.7 E(32554): 5.7e-36
Smith-Waterman score: 1133; 97.7% identity (99.4% similar) in 173 aa overlap (1-172:1-173)

               10        20        30        40        50        60
pF1KE0 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
               70        80        90       100       110       120

              130       140       150       160        170         
pF1KE0 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYA-THNE       
       :::::::::::::::::::::::::::::::::::::::::::::::. .:.:       
CCDS74 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYGKSHSEGATLLWP
              130       140       150       160       170       180

CCDS74 AVGARFTLVPSPSTLGWTLRPCHCACPEEAHLSSQSHFYRRTQKPNETDQKGKGERGPAG
              190       200       210       220       230       240

>>CCDS74244.1 CIRBP gene_id:1153|Hs108|chr19              (168 aa)
 initn: 1126 init1: 1126 opt: 1126  Z-score: 757.3  bits: 146.5 E(32554): 7.3e-36
Smith-Waterman score: 1126; 100.0% identity (100.0% similar) in 167 aa overlap (1-167:1-167)

               10        20        30        40        50        60
pF1KE0 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
               70        80        90       100       110       120

              130       140       150       160       170  
pF1KE0 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE
       :::::::::::::::::::::::::::::::::::::::::::::::     
CCDS74 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYG    
              130       140       150       160            

>>CCDS14301.1 RBM3 gene_id:5935|Hs108|chrX                (157 aa)
 initn: 669 init1: 466 opt: 526  Z-score: 370.5  bits: 74.9 E(32554): 2.6e-14
Smith-Waterman score: 653; 64.9% identity (83.0% similar) in 171 aa overlap (1-166:1-157)

               10        20        30        40        50        60
pF1KE0 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
       :.:.:::::::::.:.:.::.::. ::..: ::::::::::::::::::::.:: : . :
CCDS14 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
       . :: ::::.:.::::::::.::::.    :: :::     ::  :..::::..::::::
CCDS14 SVAMRAMNGESLDGRQIRVDHAGKSA----RGTRGG-----GF--GAHGRGRSYSRGGGD
               70        80            90              100         

               130           140       150       160       170  
pF1KE0 RGYGGNRF-ESRSGGYG-G---SRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE
       .:::..:. .:: :::: :   :::: ..:.: ::: :: :::.:::.::.      
CCDS14 QGYGSGRYYDSRPGGYGYGYGRSRDY-NGRNQ-GGY-DRYSGGNYRDNYDN      
     110       120       130        140         150             




172 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:25:35 2016 done: Wed Nov  2 20:25:36 2016
 Total Scan time:  1.540 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]