FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0608, 359 aa
  1>>>pF1KE0608 359 - 359 aa - 359 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2158+/-0.000828; mu= 12.2527+/- 0.050
 mean_var=91.2368+/-17.475, 0's: 0 Z-trim(109.6): 57  B-trim: 2 in 1/51
 Lambda= 0.134273
 statistics sampled from 10971 (11023) to 10971 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.339), width:  16
 Scan time:  3.050

The best scores are:                                      opt bits E(32554)
CCDS2204.1 CYTIP gene_id:9595|Hs108|chr2           ( 359) 2358 466.7 1.4e-131
CCDS8817.1 GRASP gene_id:160622|Hs108|chr12        ( 395)  542 114.9 1.2e-25
CCDS61124.1 GRASP gene_id:160622|Hs108|chr12       ( 252)  332 74.1 1.4e-13


>>CCDS2204.1 CYTIP gene_id:9595|Hs108|chr2                (359 aa)
 initn: 2358 init1: 2358 opt: 2358  Z-score: 2476.0  bits: 466.7 E(32554): 1.4e-131
Smith-Waterman score: 2358; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)

               10        20        30        40        50        60
pF1KE0 MSLQRLLQHSSNGNLADFCAGPAYSSYSTLTGSLTMDDNRRIQMLADTVATLPRGRKQLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MSLQRLLQHSSNGNLADFCAGPAYSSYSTLTGSLTMDDNRRIQMLADTVATLPRGRKQLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LTRSSSLSDFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LTRSSSLSDFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 HCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETLNGTMILKRTELEAKLQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 HCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETLNGTMILKRTELEAKLQV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LKQTLKQKWVEYRSLQLQEHRLLHGDAANCPSLENMDLDELSLFGPLPGPGPALVDRNRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LKQTLKQKWVEYRSLQLQEHRLLHGDAANCPSLENMDLDELSLFGPLPGPGPALVDRNRL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 SSESSCKSWLSSMTMDSEDGYQTCVSEDSSRGAFSRQTSTDDECFIPKEGDDFLRRSSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 SSESSCKSWLSSMTMDSEDGYQTCVSEDSSRGAFSRQTSTDDECFIPKEGDDFLRRSSSR
              250       260       270       280       290       300

              310       320       330       340       350         
pF1KE0 RNRSISNTSSGSMSPLWEGNLSSMFGTLPRKSRKGSVRKQLLKFIPGLHRAVEEEESRF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 RNRSISNTSSGSMSPLWEGNLSSMFGTLPRKSRKGSVRKQLLKFIPGLHRAVEEEESRF
              310       320       330       340       350         

>>CCDS8817.1 GRASP gene_id:160622|Hs108|chr12             (395 aa)
 initn: 667 init1: 349 opt: 542  Z-score: 574.1  bits: 114.9 E(32554): 1.2e-25
Smith-Waterman score: 643; 39.8% identity (68.3% similar) in 334 aa overlap (45-359:71-395)

           20        30        40        50        60        70    
pF1KE0 LADFCAGPAYSSYSTLTGSLTMDDNRRIQMLADTVATLPRGRKQLALTRSSSLSDFSWSQ
                                     :: . .:::: ::  .. : ..::.   .:
CCDS88 PPAAAATPGPPADELYAALEDYHPAELYRALAVSGGTLPR-RKGSGF-RWKNLSQSPEQQ
               50        60        70        80          90        

           80        90       100       110       120       130    
pF1KE0 RKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANI
       ::..:.::.::.:::::::.:  ....    :: :..:...:.:::. :::  ::..:..
CCDS88 RKVLTLEKEDNQTFGFEIQTYGLHHREEQRVEMVTFVCRVHESSPAQLAGLTPGDTIASV
      100       110       120       130       140       150        

          140       150       160       170       180       190    
pF1KE0 NGVSTEGFTYKQVVDLIRSSGNLLTIETLNGTMILKRTELEAKLQVLKQTLKQKWVEYRS
       ::...::. ....::.:..:::.: .::: :: : ...::::.:: ::::: .:: ::::
CCDS88 NGLNVEGIRHREIVDIIKASGNVLRLETLYGTSI-RKAELEARLQYLKQTLYEKWGEYRS
      160       170       180       190        200       210       

          200       210        220           230        240        
pF1KE0 LQLQEHRLLHGDAANCPSL-ENMDLDELSLFGP--LPG--P-GPALVDRNRLSSESSCKS
       :..::.::.:: ... ::. ....  .  :.:   :::  : :: :.  .:       ..
CCDS88 LMVQEQRLVHGLVVKDPSIYDTLESVRSCLYGAGLLPGSLPFGPLLAVPGRP------RG
       220       230       240       250       260             270 

      250       260        270                280       290        
pF1KE0 WLSSMTMDSEDG-YQTCVSEDSSRGAF------SRQTS---TDDECFIPKEGDDF-LRRS
              :..:. :.::   ::   :.      .:  .   ..     :  :    : ::
CCDS88 GARRARGDADDAVYHTCFFGDSEPPALPPPPPPARAFGPGPAETPAVGPGPGPRAALSRS
             280       290       300       310       320       330 

       300       310         320       330       340       350     
pF1KE0 SSRRNRSISNTSSGSM-SPLW-EGNLSSMFGTLPRKSRKGSVRKQLLKFIPGLHRAVEEE
       .: :  . .. ..:.  . :: :.  ... :   ::..  : :..::::::::.:..:::
CCDS88 ASVRCAGPGGGGGGGAPGALWTEAREQALCGPGLRKTKYRSFRRRLLKFIPGLNRSLEEE
             340       350       360       370       380       390 

           
pF1KE0 ESRF
       ::..
CCDS88 ESQL
           

>>CCDS61124.1 GRASP gene_id:160622|Hs108|chr12            (252 aa)
 initn: 473 init1: 167 opt: 332  Z-score: 357.2  bits: 74.1 E(32554): 1.4e-13
Smith-Waterman score: 433; 37.5% identity (66.0% similar) in 253 aa overlap (126-359:7-252)

         100       110       120       130       140       150     
pF1KE0 RPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSG
                                     ..::..:..::...::. ....::.:..::
CCDS61                         MTLLPSKGGDTIASVNGLNVEGIRHREIVDIIKASG
                                       10        20        30      

         160       170       180       190       200       210     
pF1KE0 NLLTIETLNGTMILKRTELEAKLQVLKQTLKQKWVEYRSLQLQEHRLLHGDAANCPSL-E
       :.: .::: :: : ...::::.:: ::::: .:: :::::..::.::.:: ... ::. .
CCDS61 NVLRLETLYGTSI-RKAELEARLQYLKQTLYEKWGEYRSLMVQEQRLVHGLVVKDPSIYD
         40         50        60        70        80        90     

          220           230        240       250       260         
pF1KE0 NMDLDELSLFGP--LPG--P-GPALVDRNRLSSESSCKSWLSSMTMDSEDG-YQTCVSED
       ...  .  :.:   :::  : :: :.  .:       ..       :..:. :.::   :
CCDS61 TLESVRSCLYGAGLLPGSLPFGPLLAVPGRP------RGGARRARGDADDAVYHTCFFGD
         100       110       120             130       140         

      270                280       290        300       310        
pF1KE0 SSRGAF------SRQTS---TDDECFIPKEGDDF-LRRSSSRRNRSISNTSSGSM-SPLW
       :   :.      .:  .   ..     :  :    : ::.: :  . .. ..:.  . ::
CCDS61 SEPPALPPPPPPARAFGPGPAETPAVGPGPGPRAALSRSASVRCAGPGGGGGGGAPGALW
     150       160       170       180       190       200         

        320       330       340       350         
pF1KE0 -EGNLSSMFGTLPRKSRKGSVRKQLLKFIPGLHRAVEEEESRF
        :.  ... :   ::..  : :..::::::::.:..:::::..
CCDS61 TEAREQALCGPGLRKTKYRSFRRRLLKFIPGLNRSLEEEESQL
     210       220       230       240       250  




359 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:29:57 2016 done: Wed Nov  2 20:29:58 2016
 Total Scan time:  3.050 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]